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AT1G68340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1639)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1639); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1639) (TAIR:AT1G25370.1); Has 250 Blast hits to 250 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 246; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JSAMeggNOG:ENOG41114R9EMBL:AC016447EMBL:AY048271
EMBL:AY072627EMBL:AY087302EMBL:CP002684EnsemblPlants:AT1G68340
EnsemblPlants:AT1G68340.1entrez:843163GeneID:843163Gramene:AT1G68340.1
hmmpanther:PTHR33130hmmpanther:PTHR33130:SF3HOGENOM:HOG000070906InterPro:IPR012438
KEGG:ath:AT1G68340OMA:TGHERSKPfam:PF07797PhylomeDB:Q9C9G9
PIR:B96707Proteomes:UP000006548RefSeq:NP_564928.1STRING:3702.AT1G68340.1
TAIR:AT1G68340UniGene:At.18269UniProt:Q9C9G9
Coordinates (TAIR10) chr1:-:25614440..25615335
Molecular Weight (calculated) 28142.40 Da
IEP (calculated) 8.45
GRAVY (calculated) -0.99
Length 246 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTTGHERS KTLINFSLPK LWGTQRLLRC GKGDDSDGDG GEGSSSGGDQ RIRRRSSNFE SDHQNRRLKV ESSEKEGIEE FREKIMLDLR NVADKMKESI
101: FRQQVLLGEE EEDKEIEIER DDSPPEATGA ATVEVRPWNL RKRRAACKAS ISLGIDSKNQ CKESVMNPSM LGNELGKDRS RLLYTLSKKE IEEDYMMMIG
201: LKPPRRPKKR SRTVQKQIDL LNFASYITEI TEDLYNVPDQ AEKRKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)