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AT1G66820.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.976
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30962257 (2019): plastid
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25641898 (2015): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : glycine-rich protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycine-rich protein; Has 4612 Blast hits to 1114 proteins in 179 species: Archae - 18; Bacteria - 331; Metazoa - 2059; Fungi - 93; Plants - 1513; Viruses - 136; Other Eukaryotes - 462 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JX99eggNOG:ENOG411046MEMBL:AC013288EMBL:AY063793
EMBL:AY084403EMBL:AY091289EMBL:CP002684EnsemblPlants:AT1G66820
EnsemblPlants:AT1G66820.1entrez:843000GeneID:843000Gramene:AT1G66820.1
hmmpanther:PTHR34201hmmpanther:PTHR34201:SF2HOGENOM:HOG000093171IntAct:Q9C9N4
KEGG:ath:AT1G66820OMA:GMGCGIGProteomes:UP000006548RefSeq:NP_564884.1
STRING:3702.AT1G66820.1TAIR:AT1G66820TMHMM:TMhelixUniGene:At.27161
UniProt:Q9C9N4
Coordinates (TAIR10) chr1:+:24930093..24930422
Molecular Weight (calculated) 11049.20 Da
IEP (calculated) 8.22
GRAVY (calculated) 0.08
Length 109 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSTNKLWSR KPDVKTGKSE FPVTRFLRTQ IDNIKTTTVG PGIGGGIGCG AGIGIGLSGG LGIGASEGLD HSNVVLGFGI GCGIGFGFGY GFGVGGGYSF
101: DDIKERFDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)