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AT1G53645.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; Has 15375 Blast hits to 12179 proteins in 920 species: Archae - 8; Bacteria - 1425; Metazoa - 5915; Fungi - 2848; Plants - 1527; Viruses - 230; Other Eukaryotes - 3422 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVUZeggNOG:ENOG410YG16EMBL:AC024260EMBL:AK230252
EMBL:AY057673EMBL:AY143929EMBL:CP002684EnsemblPlants:AT1G53645
EnsemblPlants:AT1G53645.1entrez:841801GeneID:841801Gramene:AT1G53645.1
KEGG:ath:AT1G53645OMA:TNLMIECPIR:E96576Proteomes:UP000006548
RefSeq:NP_564639.1STRING:3702.AT1G53645.1TAIR:AT1G53645UniGene:At.24117
UniProt:Q9C8L9
Coordinates (TAIR10) chr1:-:20026434..20028587
Molecular Weight (calculated) 56922.00 Da
IEP (calculated) 6.42
GRAVY (calculated) -1.01
Length 523 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSAIGRRFS NPNGFTIASL VKQTPFLTQS TSHFSSSSDS SGRGRGRGSG EDGGFPAAGR GQFGVNREPV VPGREPSSAG GYGHGRGRPI QSDSISPAFT
101: SFVKSDSPSI GRGRGSVGSD TVSPFAAEPP RQSPPPPQQQ QSQSQQQRSQ PQQQQPRSQP QQQPNDESQG SPVFVKLQEM QDATSSPPPP ESKPGQADPP
201: DNIFNALGNE FSHPSGAGRG KPLVESAPIR QEDNRQIRRP PPPPQQQRVQ PQQKRAPTVK DGTPKPQLSA EEAGRRARSE LSRGEAEGSS VGGRGGRGRG
301: RGRGARGRGR GRGGDGWRDD KKEEEGEQEA MRIFAGDSAD GEKFAEKMGP ELMKTLAEGF EEICEKALPS TTHDAIIDAY DTNLMIECEP EYIMPDFGSN
401: PDIDEKPPMS LRECLEKVKP FIVAYEGIKD QEEWEEAINE AMTQAPLMKE IVDHYSGPDR VTAKKQNEEL DRIATTLPAS APDSVKRFAD RAALTLKSNP
501: GWGFDKKYQF MDKLVLEVSQ SYK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)