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AT1G33280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAC domain containing protein 15
Curator
Summary (TAIR10)
NAC domain protein. SMB, BRN1, and BRN2 act to regulate root cap maturation, in a partially redundant fashion.BRN1 and BRN2, control the cell wall maturation processes that are required to detach root cap layers from the root.
Computational
Description (TAIR10)
NAC domain containing protein 15 (NAC015); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 70 (TAIR:AT4G10350.1); Has 2985 Blast hits to 2980 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2985; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC027035EMBL:CP002684EnsemblPlants:AT1G33280EnsemblPlants:AT1G33280.1
entrez:840223GeneID:840223Genevisible:Q9C878GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009834
GO:GO:0010628GO:GO:0045893GO:GO:0048829Gramene:AT1G33280.1
hmmpanther:PTHR31989hmmpanther:PTHR31989:SF18HOGENOM:HOG000237406InParanoid:Q9C878
InterPro:IPR003441KEGG:ath:AT1G33280OMA:RESEYQQPaxDb:Q9C878
Pfam:PF02365Pfam:Q9C878Pfscan:PS51005PhylomeDB:Q9C878
PIR:F86456PRIDE:Q9C878PRO:PR:Q9C878PROSITE:PS51005
ProteinModelPortal:Q9C878Proteomes:UP000006548RefSeq:NP_174598.1SMR:Q9C878
STRING:3702.AT1G33280.1SUPFAM:SSF101941TAIR:AT1G33280tair10-symbols:ANAC015
tair10-symbols:BRN1tair10-symbols:NAC015UniGene:At.51900UniProt:Q9C878
Coordinates (TAIR10) chr1:+:12072741..12073833
Molecular Weight (calculated) 35254.50 Da
IEP (calculated) 8.07
GRAVY (calculated) -0.82
Length 305 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSNGGVPP GFRFHPTDEE LLHYYLKKKI SYEKFEMEVI KEVDLNKIEP WDLQDRCKIG STPQNEWYFF SHKDRKYPTG SRTNRATHSG FWKATGRDKC
101: IRNSYKKIGM RKTLVFYKGR APHGQKTDWI MHEYRIEDTE DDPCEDGWVV CRVFKKKNLF KVGNDVGSNI SNNRLEARSF IRRESPYQGI SMFELNKPEE
201: ISVHQYPQPP MFQPHHKPLS IGYDYSLALL PRESEYQQAC QPSGVEVGTC KAVSEWGIVN CNMVSHEDSS RAMRFEDDGN NTSSTVQPPS NLLSLRGENG
301: FLGLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)