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AT1G29760.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Putative adipose-regulatory protein (Seipin)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Putative adipose-regulatory protein (Seipin); CONTAINS InterPro DOMAIN/s: Adipose-regulatory protein, Seipin (InterPro:IPR009617); BEST Arabidopsis thaliana protein match is: Putative adipose-regulatory protein (Seipin) (TAIR:AT2G34380.1); Has 493 Blast hits to 422 proteins in 86 species: Archae - 0; Bacteria - 253; Metazoa - 134; Fungi - 11; Plants - 78; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
eggNOG:NOG250729EMBL:AC008030EMBL:CP002684EnsemblPlants:AT1G29760
EnsemblPlants:AT1G29760.1entrez:839854GeneID:839854GO:GO:0005783
GO:GO:0005789GO:GO:0006629GO:GO:0016021GO:GO:0019915
GO:GO:0034389Gramene:AT1G29760.1hmmpanther:PTHR21212hmmpanther:PTHR21212:SF1
HOGENOM:HOG000140967InParanoid:F4I340InterPro:IPR009617KEGG:ath:AT1G29760
OMA:CAGVECEPaxDb:Q9FXF3Pfam:PF06775PIR:B86421
PRIDE:F4I340ProteinModelPortal:F4I340Proteomes:UP000006548RefSeq:NP_174269.1
STRING:3702.AT1G29760.1TAIR:AT1G29760TMHMM:TMhelixUniGene:At.42984
UniProt:F4I340
Coordinates (TAIR10) chr1:+:10422381..10424116
Molecular Weight (calculated) 59680.40 Da
IEP (calculated) 4.80
GRAVY (calculated) -0.15
Length 526 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSESESESN PSTTDEFDRF LDAPDEFYYD CLPIRSNSHQ PSSLLRRRKS AHRRDLISSD IETEPSSSSD GFDVGEKSSY VEKNAELRGD IDTSDVIEST
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)