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AT1G27920.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : microtubule-associated protein 65-8
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
microtubule-associated protein 65-8 (MAP65-8); CONTAINS InterPro DOMAIN/s: Microtubule-associated protein, MAP65/ASE1-type (InterPro:IPR007145); BEST Arabidopsis thaliana protein match is: microtubule-associated protein 65-2 (TAIR:AT4G26760.1); Has 2013 Blast hits to 1836 proteins in 335 species: Archae - 36; Bacteria - 203; Metazoa - 697; Fungi - 206; Plants - 352; Viruses - 0; Other Eukaryotes - 519 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YZBKeggNOG:KOG4302EMBL:AC069471EMBL:CP002684
EnsemblPlants:AT1G27920EnsemblPlants:AT1G27920.1entrez:839685GeneID:839685
Genevisible:Q9C7G0GO:GO:0000226GO:GO:0000910GO:GO:0000922
GO:GO:0005634GO:GO:0005737GO:GO:0005874GO:GO:0007067
Gramene:AT1G27920.1hmmpanther:PTHR19321hmmpanther:PTHR19321:SF3HOGENOM:HOG000238749
InParanoid:Q9C7G0InterPro:IPR007145iPTMnet:Q9C7G0KEGG:ath:AT1G27920
KO:K16732ncoils:CoilOMA:QQTKNISPANTHER:PTHR19321
PaxDb:Q9C7G0Pfam:PF03999Pfam:Q9C7G0PhylomeDB:Q9C7G0
PIR:E86404PRIDE:Q9C7G0PRO:PR:Q9C7G0ProteinModelPortal:Q9C7G0
Proteomes:UP000006548RefSeq:NP_174113.2SMR:Q9C7G0STRING:3702.AT1G27920.1
TAIR:AT1G27920tair10-symbols:MAP65-8UniGene:At.51795UniProt:Q9C7G0
Coordinates (TAIR10) chr1:+:9727106..9729848
Molecular Weight (calculated) 64606.90 Da
IEP (calculated) 6.85
GRAVY (calculated) -0.73
Length 562 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSLQTPIEM RSSSLLDTSC GYLLRELQMI WDEVGEDKFE REKVLLDIEQ ECVEAYRRKV DHANVSRSRL HQELAESEAE LTHFLLCLGE RSVPGRPEKK
101: GGTLREQLDS IAPALREMRL RKDERVKQFR SVKGEIQKIS AEIAGRSTYE DSTRKITIDD NDLSNKKLEE YQNELHRLHD EKNERLQKVD IYICAIRDLS
201: ATLGTEASMI ITKIHPSLND LYGISKNISD DILKKLNGTV VSLEEEKHKR LEKLHHLGRA LSNLWNLMDA SYEDRQKFFH VIDLLSSAPS DVCAPGSITL
301: DIIQQAEAEV KRLDQLKASR IKELFIKKQK ELEDTCNMSH METPSTEMGN ITNLVDSGEV DHVDLLAAMD EKIARAKEEA ASRKGIIEKV DRWMLASDEE
401: RWLEEYDQDE NRYSVSRNAH RNLRRAERAR ITVSKISGLV ESILVKAKSW EVERQKVFLY NEVPLVAMLQ EYNKLRQEKE MEKQRLREMK KMSIPQPVAE
501: GDNFYMARPA SSNRRISNRS MNGGFGSGSP INRKYSGGFN NTNNNYTALG TSIRRESRKS EA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)