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AT1G27600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleotide-diphospho-sugar transferases superfamily protein
Curator
Summary (TAIR10)
Encodes a member of the GT43 family glycosyltransferases involved in glucuronoxylan biosynthesis: AT2G37090 (IRX9) and AT1G27600 (IRX9-L or I9H, IRX9 homolog); AT4G36890 (IRX14) and AT5G67230 (IRX14-L or I14H, IRX14 homolog). They form two functionally non-redundant groups essential for the normal elongation of glucuronoxylan backbone. I9H functions redundantly with IRX9, I14H is redundant with IRX14. IRX9 or I9H do not complement IRX14, IRX14 or I14H do not complement IRX9.
Computational
Description (TAIR10)
IRREGULAR XYLEM 9-LIKE (IRX9-L); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 (InterPro:IPR005027); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT2G37090.1); Has 684 Blast hits to 682 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 425; Fungi - 0; Plants - 243; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP79eggNOG:KOG1476EMBL:KJ138981EnsemblPlants:AT1G27600
EnsemblPlants:AT1G27600.1EnsemblPlants:AT1G27600.2entrez:839652ExpressionAtlas:W8PW09
Gene3D:3.90.550.10GeneID:839652GO:GO:0015018GO:GO:0016021
Gramene:AT1G27600.1Gramene:AT1G27600.2gramene_plant_reactome:5654909gramene_plant_reactome:6877716
hmmpanther:PTHR10896hmmpanther:PTHR10896:SF20InterPro:IPR005027InterPro:IPR029044
KEGG:ath:AT1G27600OMA:HENGGSHPANTHER:PTHR10896PaxDb:W8PW09
Pfam:PF03360Pfam:Q9SXC4ProteinModelPortal:W8PW09RefSeq:NP_564290.2
RefSeq:NP_973922.1SMR:W8PW09STRING:3702.AT1G27600.1SUPFAM:SSF53448
tair10-symbols:I9Htair10-symbols:IRX9-LTMHMM:TMhelixUniGene:At.41047
UniGene:At.41048UniProt:Q9SXC4UniProt:W8PW09
Coordinates (TAIR10) chr1:-:9604083..9605881
Molecular Weight (calculated) 45189.20 Da
IEP (calculated) 9.74
GRAVY (calculated) -0.38
Length 394 amino acids
Sequence (TAIR10)
(BLAST)
001: MASIRRTLSP MYHDRSHENG GSHKGFTIGG SSSKHNSSQF LSYLTKLLGV TSDPKSSRRG PWRRPFYQFL VFFLLGFVLG LTPFGKMEDV NGSDRFSFEI
101: KQPYVEERLE NRKREEAAVD AVSFVAETEN GKKEVNFVPK KLLIVVTPTY NRAMQAYYLN RVAQTLRLVE SPVLWIVVEG NVASFETSEI LRKTGVMYRH
201: LVCKRNMTSI KDRGVHQRNT ALEHIELHKL DGIVYFADDD NIYSLELFQS LRQISRFGTW PVAMLAQSKN KAILEGPVCN GSQVIGWHTN EKSKRLRRFH
301: VDMSGFAFNS TILWDPKRWR RPFSHPTRQL DTVKEGFQET SFIEQVVADE SEMEGVPPAC SSILNWHLHL DALDVPYPQG WAIQKNLQAL ITMK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)