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AT1G22730.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.990
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : MA3 domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MA3 domain-containing protein; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT5G63190.2); Has 2025 Blast hits to 776 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 1297; Fungi - 8; Plants - 551; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQZZeggNOG:KOG0403EMBL:AC003979EMBL:AY034972
EMBL:AY133820EMBL:CP002684EnsemblPlants:AT1G22730EnsemblPlants:AT1G22730.1
entrez:838879Gene3D:1.25.40.180GeneID:838879GO:GO:0016853
Gramene:AT1G22730.1hmmpanther:PTHR12626hmmpanther:PTHR12626:SF2HOGENOM:HOG000239865
InterPro:IPR003891InterPro:IPR016021InterPro:IPR016024KEGG:ath:AT1G22730
OMA:VKRALIMPfam:PF02847Pfscan:PS51366PhylomeDB:O80548
PIR:T00771PRO:PR:O80548PROSITE:PS51366Proteomes:UP000006548
RefSeq:NP_173687.1SMART:SM00544SMR:O80548STRING:3702.AT1G22730.1
SUPFAM:SSF48371TAIR:AT1G22730UniGene:At.17031UniProt:O80548
Coordinates (TAIR10) chr1:+:8046511..8048769
Molecular Weight (calculated) 77248.40 Da
IEP (calculated) 4.85
GRAVY (calculated) -0.26
Length 693 amino acids
Sequence (TAIR10)
(BLAST)
001: MEHQDLTDSR KDPLCISQLK ISSSSLDPLP QANMAEDLTK SRRHSPIKVE GSEETWGVED DDDLTDPIFD TIEGNGHSDP TSCFDADLSE YKKKATVIVE
101: EYFGTNDVVS VVNELKELGM AEYRYYFVKK LVSMAMDRHD KEKEMAAFLL STLYADVIDP PEVYRGFNKL VASADDLSVD IPDAVDVLAV FVARAIVDDI
201: LPPAFLKKQM KLLPDNSKGV EVLRKAEKSY LATPLHAEVV EKRWGGTDNW TAEDVKARIN DLLKEYVMSG DKKEAFRCIK GLKVPFFHHE IVKRALIMAM
301: ERRKAQVRLL DLLKETIEVG LINSTQVTKG FSRIIDSIED LSLDIPDARR ILQSFISKAA SEGWLCASSL KSLSADAGEK LLENSSANVF KDKAKSIIRE
401: YFLSGDTSEV VHCLDTELNA SSSQLRAIFV KYLITLAMDR KKREKEMACV LVSTLGFPPK DVRSAFSMLI ESADDTALDN PVVVEDLAMF LARAVVDEVL
501: APRDLEEVLN QTPEAGSSVG EKVIQMAKTL LKARLSGERI LRCWGGGGIE TNSPGSTVKE VKEKIQILLE EYVSGGDLRE ASRCVKELGM PFFHHEVVKK
601: SVVRIIEEKE NEERLWKLLK VCFDSGLVTI YQMTKGFKRV DESLEDLSLD VPDAAKKFSS CVERGKLEGF LDESFASEDS QSKKQNGSSS SSG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)