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AT1G22090.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.971
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF626)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 2204 (emb2204); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G02770.1); Has 202 Blast hits to 201 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTT5eggNOG:ENOG41107J7EMBL:AC069252EMBL:AY084660
EMBL:CP002684EnsemblPlants:AT1G22090EnsemblPlants:AT1G22090.1entrez:838814
GeneID:838814Genevisible:Q9LM50GO:GO:0007275Gramene:AT1G22090.1
hmmpanther:PTHR31260hmmpanther:PTHR31260:SF28HOGENOM:HOG000112307InterPro:IPR006462
KEGG:ath:AT1G22090OMA:SDGFDYPPaxDb:Q9LM50Pfam:PF04776
Pfam:Q9LM50PhylomeDB:Q9LM50PIR:G86353PRO:PR:Q9LM50
Proteomes:UP000006548RefSeq:NP_564157.1STRING:3702.AT1G22090.1TAIR:AT1G22090
tair10-symbols:emb2204TIGRfam:TIGR01572TIGRFAMs:TIGR01572UniGene:At.41623
UniProt:Q9LM50
Coordinates (TAIR10) chr1:+:7795721..7797252
Molecular Weight (calculated) 38642.00 Da
IEP (calculated) 8.63
GRAVY (calculated) -0.59
Length 329 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRRVEYTLA PPQRNESDGF DYPDGIPISY NLHRLRHFEC EGSYPKYPYG SLVKFYAMVG LHRYNVLEGK NLQLDTLKSF NMRINCGASS YYITLAARVP
101: DSGLKQIFQV LVHEERLGSL DMTCTIARPR VTTNVPFLRP HSESEYDYMD NDELPDWPSE IAFDDTKRFH LVKESELRDN DWIRLYLELT LVAHDRFLTV
201: HYLSQLEIVK VAIEEVEQPN ASLNTKTTFV YITYKDLAKA QIGEPVDRKA IVRKIINETT GLLRLRGDYW SGERSVITPE EEYMLLHGGE KVRNNEQRSK
301: KLKRRVGVHR LWRWWYQAYK NRGLRSSSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)