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AT1G21340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Dof-type zinc finger DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Dof-type zinc finger DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT3G52440.1); Has 1085 Blast hits to 1080 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1080; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZ8SeggNOG:ENOG410YN7TEMBL:AB493472EnsemblPlants:AT1G21340
EnsemblPlants:AT1G21340.1entrez:838733ExpressionAtlas:C0SUW9GeneID:838733
GO:GO:0003677GO:GO:0006355Gramene:AT1G21340.1InterPro:IPR003851
KEGG:ath:AT1G21340OMA:DICQETDPaxDb:C0SUW9Pfam:P68349
Pfam:PF02701Pfscan:PS50884PhylomeDB:C0SUW9ProDom:PD007478
PROSITE:PS01361PROSITE:PS50884RefSeq:NP_173556.1scanprosite:PS01361
TAIR:AT1G21340UniGene:At.51708UniProt:C0SUW9UniProt:P68349
Coordinates (TAIR10) chr1:+:7476087..7476869
Molecular Weight (calculated) 29680.10 Da
IEP (calculated) 4.48
GRAVY (calculated) -0.84
Length 260 amino acids
Sequence (TAIR10)
(BLAST)
001: MLPYIGHNSY QQHQFPLPEM EIPEKWKLSY EQEAITAPAC PRCASSNTKF CYYNNYSLSQ PRYFCKGCRR YWTKGGSLRN IPVGGGCRKR SRSRQNSHKR
101: FGRNENRPDG LINQDDGFQS SPPGSDIDLA AVFAQYVTDR SPSSTDNTTG SDQDSPITTT THALESLSWD ICQETDVDLG FYGEFNNLTQ KTKEDQEVFG
201: QFLQEDREEI FEFQGLLDDK EIQEILECSF SEEPDQLVSQ GSFMINGDNW SSTDLTRFGI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)