AT1G19860.1
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Subcellular Consensus
(Prediction and Experimental)  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? What is ASURE? SUBAcon computations |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G66270.1); Has 210 Blast hits to 187 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 12; Plants - 160; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6891654..6894400 | ||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45129.40 Da | ||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.11 | ||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.69 | ||||||||||||||||||||||||||||||||||||||||||
| Length | 413 amino acids | ||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK 101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS 201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA 301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS 401: DMQNAKRMRF DRD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)