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AT1G19860.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc finger C-x8-C-x5-C-x3-H type family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G66270.1); Has 210 Blast hits to 187 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 12; Plants - 160; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
BioGrid:23813eggNOG:ENOG410IQV9eggNOG:ENOG4111W68EMBL:AC007797EMBL:AK221579EMBL:BT025557EMBL:CP002684
EnsemblPlants:AT1G19860EnsemblPlants:AT1G19860.1entrez:838574GeneID:838574Genevisible:Q56XU4GO:GO:0003677GO:GO:0046872
Gramene:AT1G19860.1hmmpanther:PTHR33400hmmpanther:PTHR33400:SF2HOGENOM:HOG000077499InParanoid:Q56XU4InterPro:IPR000571KEGG:ath:AT1G19860
OMA:QRPRDSKPaxDb:Q56XU4Pfam:Q56XU4Pfscan:PS50103PhylomeDB:Q56XU4PIR:H86331PRIDE:Q56XU4
PRO:PR:Q56XU4PROSITE:PS50103ProteinModelPortal:Q56XU4Proteomes:UP000006548RefSeq:NP_564096.1SMR:Q56XU4STRING:3702.AT1G19860.1
TAIR:AT1G19860UniGene:At.41731UniGene:At.71838UniProt:Q56XU4
Coordinates (TAIR10) chr1:-:6891654..6894400
Molecular Weight (calculated) 45129.40 Da
IEP (calculated) 5.11
GRAVY (calculated) -0.69
Length 413 amino acids
Sequence (TAIR10)
(BLAST)
001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)