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AT1G15370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.946
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SNARE-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SNARE-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012); Has 91 Blast hits to 91 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 12; Plants - 67; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
DNASU:838106eggNOG:ENOG410IVX2eggNOG:ENOG410Y3Z3EMBL:AC007591
EMBL:AF336926EMBL:AK118698EMBL:CP002684EnsemblPlants:AT1G15370
EnsemblPlants:AT1G15370.1entrez:838106GeneID:838106GO:GO:0006810
Gramene:AT1G15370.1hmmpanther:PTHR11043hmmpanther:PTHR11043:SF9HOGENOM:HOG000006342
InterPro:IPR011012KEGG:ath:AT1G15370OMA:VGKDAYDPIR:C86288
Proteomes:UP000006548RefSeq:NP_172989.1STRING:3702.AT1G15370.1SUPFAM:SSF64356
TAIR:AT1G15370UniGene:At.20475UniProt:Q9XI32
Coordinates (TAIR10) chr1:+:5287135..5288375
Molecular Weight (calculated) 16609.40 Da
IEP (calculated) 5.81
GRAVY (calculated) 0.18
Length 147 amino acids
Sequence (TAIR10)
(BLAST)
001: MILAVLFANS VGNVLIERFN GVPAEERLHW RSFLVKLGAD NLKGVKNEEL LVACHKSVYI VYTMLGDVSI FLVGKDEYDE LALAETIYII TAAVKDVCGK
101: PPTERVFLDK YGRICLCLDE IVWNGLLENT DKDRIKRLIR LKPPSEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)