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AT1G11440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.981
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 19337 Blast hits to 8589 proteins in 488 species: Archae - 26; Bacteria - 641; Metazoa - 7852; Fungi - 2167; Plants - 955; Viruses - 616; Other Eukaryotes - 7080 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J13VeggNOG:ENOG410ZUSHEMBL:AC011661EMBL:AK117824
EMBL:BT006248EMBL:CP002684EnsemblPlants:AT1G11440EnsemblPlants:AT1G11440.1
entrez:837686GeneID:837686GO:GO:0004674GO:GO:0046777
Gramene:AT1G11440.1hmmpanther:PTHR33971hmmpanther:PTHR33971:SF3HOGENOM:HOG000153070
IntAct:Q9LPZ0KEGG:ath:AT1G11440ncoils:CoilOMA:GYWPCLS
PhylomeDB:Q9LPZ0PIR:B86248Proteomes:UP000006548RefSeq:NP_172611.1
TAIR:AT1G11440UniGene:At.42132UniProt:Q9LPZ0
Coordinates (TAIR10) chr1:+:3849418..3850509
Molecular Weight (calculated) 41812.30 Da
IEP (calculated) 3.77
GRAVY (calculated) -1.10
Length 363 amino acids
Sequence (TAIR10)
(BLAST)
001: MANFYENYQS PYDYNQVNNL YDQNHYHYNQ QQQQLGFEPM SYNYYNWNES ESESEYVAYS GYDDPMSYNC YNWNGSESET TSAYVAYSVS TMSEPKHLFY
101: DPNLYTTYES PPQFSIYCSV ASALDFNEPE FDEYDPTPYG GGYDVVATYG KPLPPSVETC YPCSTAPHAK APSPPEIIAP VPLGIYDGGQ KNVVKKRVSF
201: AEPVEEVKPI ETIKEQEQEQ DEDYDEESED EDDGDDDDEE EEEGDEEAKE EEKDHSSSYG NEEYEVVDKG EVKALYVPSG YGLEATDLCE VIFGGYFPCV
301: LRNKRRQEDE QDRGAAVSCW ESNDSDPWKT TSDHLFGDSY PYGYENRSER NQFEVSSYGY RMY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)