suba logo
AT1G06050.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.939
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1336)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1336); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1336) (TAIR:AT5G10750.1); Has 364 Blast hits to 356 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 307; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
Protein Annotations
DNASU:837114eggNOG:ENOG410IGMReggNOG:ENOG410YC8XEMBL:CP002684
EnsemblPlants:AT1G06050EnsemblPlants:AT1G06050.1entrez:837114GeneID:837114
Gramene:AT1G06050.1hmmpanther:PTHR12136hmmpanther:PTHR12136:SF61InParanoid:F4IBY8
InterPro:IPR009769KEGG:ath:AT1G06050OMA:PEWIKRVPaxDb:F4IBY8
Pfam:PF07059PRIDE:F4IBY8Proteomes:UP000006548RefSeq:NP_563757.1
TAIR:AT1G06050UniGene:At.43782UniGene:At.73044UniProt:F4IBY8
Coordinates (TAIR10) chr1:-:1830726..1831667
Molecular Weight (calculated) 34852.40 Da
IEP (calculated) 5.27
GRAVY (calculated) -0.33
Length 313 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGSVGEETE PEWIKRVKLE GAVPCLKPDD NCKNGWTTPS PDTFMVRGPK YFSDKVKIPA GDFLLKPLGF DWIKGPKKLS EILSYPSSRI RKVIDEEFQK
101: DGTKPFVWAF NLQLPHKDNY SAVAYFVTTE PILEGSLMDR FLKGDDGFKK SRLKLIANIV KGPWIVRKAV GEQAICVIGR ALSCKYVSGE NFVEIDVDIG
201: SSMVASAIVH LAFGYVTTLT VDLAFLIESQ TEAELPEKLL GAVRFSELQT ESATSIELSS STSNDQWDQT TSERSSWWKS IGNGFSNLLN QDTANMNNTS
301: HGDIQKDEHV QKQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)