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AT1G02370.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G01990.1); Has 6320 Blast hits to 3912 proteins in 155 species: Archae - 0; Bacteria - 6; Metazoa - 44; Fungi - 46; Plants - 6080; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC064879EMBL:AY065448EMBL:CP002684EnsemblPlants:AT1G02370EnsemblPlants:AT1G02370.1
entrez:837735Gene3D:1.25.40.10GeneID:837735Genevisible:Q9FZ24GO:GO:0005739Gramene:AT1G02370.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF504HOGENOM:HOG000237800InParanoid:Q9FZ24InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT1G02370ncoils:Coil
OMA:NKWVREGPaxDb:Q9FZ24Pfam:PF01535Pfam:Q9FZ24Pfscan:PS51375PhylomeDB:Q9FZ24PIR:A86154
PRIDE:Q9FZ24PRO:PR:Q9FZ24PROSITE:PS51375ProteinModelPortal:Q9FZ24Proteomes:UP000006548RefSeq:NP_171739.1SMR:Q9FZ24
STRING:3702.AT1G02370.1SUPFAM:SSF48452SwissPalm:Q9FZ24TAIR:AT1G02370UniGene:At.28478UniProt:Q9FZ24
Coordinates (TAIR10) chr1:+:474516..476383
Molecular Weight (calculated) 60356.40 Da
IEP (calculated) 6.27
GRAVY (calculated) -0.32
Length 537 amino acids
Sequence (TAIR10)
(BLAST)
001: MNFRNLIASG SRLGKRFCAT VFAPASATGI VEASVSSPAA ANVVEASVSS PAAENGVRTS VAAPTVASRQ RELYKKLSML SVTGGTVAET LNQFIMEGIT
101: VRKDDLFRCA KTLRKFRRPQ HAFEIFDWME KRKMTFSVSD HAICLDLIGK TKGLEAAENY FNNLDPSAKN HQSTYGALMN CYCVELEEEK AKAHFEIMDE
201: LNFVNNSLPF NNMMSMYMRL SQPEKVPVLV DAMKQRGISP CGVTYSIWMQ SCGSLNDLDG LEKIIDEMGK DSEAKTTWNT FSNLAAIYTK AGLYEKADSA
301: LKSMEEKMNP NNRDSHHFLM SLYAGISKGP EVYRVWESLK KARPEVNNLS YLVMLQAMSK LGDLDGIKKI FTEWESKCWA YDMRLANIAI NTYLKGNMYE
401: EAEKILDGAM KKSKGPFSKA RQLLMIHLLE NDKADLAMKH LEAAVSDSAE NKDEWGWSSE LVSLFFLHFE KAKDVDGAED FCKILSNWKP LDSETMTFLI
501: KTYAAAEKTS PDMRERLSQQ QIEVSEEIQD LLKTVCP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)