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AT5G64040.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27177187 (2016): nucleus
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20049866 (2010): plastid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:11826309 (2002): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN)
Curator
Summary (TAIR10)
Encodes the only subunit of photosystem I located entirely in the thylakoid lumen. May be involved in the interaction between plastocyanin and the photosystem I complex.
Computational
Description (TAIR10)
PSAN; FUNCTIONS IN: calmodulin binding; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit N (InterPro:IPR008796); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:MONOMER-1095BioGrid:21767eggNOG:ENOG410IY0SeggNOG:ENOG411281YEMBL:AB008266EMBL:AY062835EMBL:AY081594
EMBL:CP002688EMBL:U32176EnsemblPlants:AT5G64040EnsemblPlants:AT5G64040.1entrez:836525ExpressionAtlas:P49107Gene3D:4.10.1190.10
GeneID:836525Genevisible:P49107GO:GO:0009522GO:GO:0009535GO:GO:0015979hmmpanther:PTHR36814hmmpanther:PTHR36814:SF1
HOGENOM:HOG000012544InParanoid:P49107IntAct:P49107InterPro:IPR008796iPTMnet:P49107MINT:MINT-119261PaxDb:P49107
Pfam:P49107Pfam:PF05479PhylomeDB:P49107PRIDE:P49107PRO:PR:P49107ProteinModelPortal:P49107Proteomes:UP000006548
RefSeq:NP_201209.1SMR:P49107STRING:3702.AT5G64040.2TAIR:AT5G64040tair10-symbols:PSANUniGene:At.21476UniProt:P49107
Coordinates (TAIR10) chr5:-:25628724..25629409
Molecular Weight (calculated) 18430.00 Da
IEP (calculated) 9.28
GRAVY (calculated) -0.16
Length 171 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAMNSSVLT CSYAIAGSGS VELNQKVGLV NSSVGFGQKK QMIMPVIKAQ RVVGDDVDGS NGRRSAMVFL AATLFSTAAV SASANAGVID EYLERSKTNK
101: ELNDKKRLAT SGANFARAFT VQFGSCKFPE NFTGCQDLAK QKKVPFISED IALECEGKDK YKCGSNVFWK W
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)