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AT5G61820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.852
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IF9ReggNOG:ENOG4111H2BEMBL:AY065363EMBL:AY117191EMBL:CP002688EnsemblPlants:AT5G61820EnsemblPlants:AT5G61820.1
entrez:836304GeneID:836304GO:GO:0005773GO:GO:0016021Gramene:AT5G61820.1hmmpanther:PTHR33390hmmpanther:PTHR33390:SF1
InterPro:IPR011692KEGG:ath:AT5G61820OMA:TACKVEYPfam:PF07712PhylomeDB:Q8VZ21Proteomes:UP000006548RefSeq:NP_200990.2
STRING:3702.AT5G61820.1TAIR:AT5G61820TMHMM:TMhelixUniGene:At.24832UniGene:At.67152UniProt:Q8VZ21
Coordinates (TAIR10) chr5:-:24834505..24836223
Molecular Weight (calculated) 53074.20 Da
IEP (calculated) 6.39
GRAVY (calculated) -0.28
Length 475 amino acids
Sequence (TAIR10)
(BLAST)
001: MMARYHRRSM ILCLVLLSLS ISPSQGFLGT EEKIKSAVFY SPKLVMNPGS VANPYLFDID FPRGHIGLKA FDAEVVDEAG KPVPLHETYL HHWIVEPYYV
101: RKGSKLPQRE MFRNHGFSRE DPESNLDSKS DIILVKNGGL CRSLTLRHFF GLGSETRETS TYVPDPYAIE IGNPEETPDG YEFKWLLNIH AIDTRGVEDK
201: KGCIECLCDL YNVTIDEYGR AIRPGYKGGL YCCYDKTQCR VKSGFDNGEK TRTLYLKYTV RWVDWDSSVL PAKVYIFDVT DSWERSKGDS QEHICHVEYE
301: VKPCKTNGDG CVDVKKKSLV MPFDGYIVYG VAHQHAGGIG GALYRENGEG ICASMPKYGN GDEPGNEAGY IVGMSSCYPA DPVKVSYGET LTLESNYSNA
401: VGHTGVMGLF YILVAQQLPE PDSSLPNKQH FEAPARSLSF LAIFAVTVVV AVVVLIAAVI YRRQKREDGY QSLST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)