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AT5G59860.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.908
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G46020.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:CP002688EnsemblPlants:AT5G59860EnsemblPlants:AT5G59860.1entrez:836108Gene3D:3.30.70.330GeneID:836108GO:GO:0000166
GO:GO:0003676Gramene:AT5G59860.1hmmpanther:PTHR24012InParanoid:F4JXD2InterPro:IPR000504InterPro:IPR012677KEGG:ath:AT5G59860
PaxDb:F4JXD2Pfam:PF00076Pfscan:PS50102PRIDE:F4JXD2PROSITE:PS50102ProteinModelPortal:F4JXD2Proteomes:UP000006548
RefSeq:NP_200794.1SMART:SM00360SMR:F4JXD2STRING:3702.AT5G59860.1SUPFAM:SSF54928TAIR:AT5G59860UniGene:At.66722
UniProt:F4JXD2
Coordinates (TAIR10) chr5:+:24113462..24114449
Molecular Weight (calculated) 17704.40 Da
IEP (calculated) 11.05
GRAVY (calculated) -0.75
Length 157 amino acids
Sequence (TAIR10)
(BLAST)
001: MKADPRKETG IKLVAVEISL TFGNRKWQPH KNSGAKDEEA KFNKRTKYKM RIRPRSSISK RRRLIGGKTL TCVSNSGLSA YTTDQSLRQL FAPFARLIKD
101: QQTQRPKGFG FITFESEDDA QKALKALNGK IVNGRLIFVE TAKEVEAPTT SLKSNKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)