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AT5G41310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.975
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (TAIR:AT1G63640.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5059eggNOG:KOG0239EMBL:CP002688EnsemblPlants:AT5G41310EnsemblPlants:AT5G41310.1entrez:834132Gene3D:1.10.418.10
Gene3D:3.40.850.10GeneID:834132GO:GO:0003777GO:GO:0005524GO:GO:0005874GO:GO:0007018Gramene:AT5G41310.1
hmmpanther:PTHR24115hmmpanther:PTHR24115:SF477InParanoid:F4JX00InterPro:IPR001715InterPro:IPR001752InterPro:IPR019821InterPro:IPR027417
InterPro:IPR027640KEGG:ath:AT5G41310KO:K10406ncoils:CoilOMA:ETHEKQFPANTHER:PTHR24115PaxDb:F4JX00
Pfam:PF00225Pfam:PF00307Pfscan:PS50021Pfscan:PS50067PRIDE:F4JX00PRINTS:PR00380PROSITE:PS00411
PROSITE:PS50021PROSITE:PS50067ProteinModelPortal:F4JX00Proteomes:UP000006548RefSeq:NP_198947.1scanprosite:PS00411SMART:SM00129
SMR:F4JX00STRING:3702.AT5G41310.1SUPFAM:SSF47576SUPFAM:SSF52540TAIR:AT5G41310UniGene:At.55294UniProt:F4JX00
Coordinates (TAIR10) chr5:-:16516634..16522392
Molecular Weight (calculated) 108121.00 Da
IEP (calculated) 8.95
GRAVY (calculated) -0.68
Length 961 amino acids
Sequence (TAIR10)
(BLAST)
001: MKNRIKKGSS MIGVYGRSDG SSSIQSSNGS ESRESIDDNK QGHQSLVEWL NETLPYLNLP WEASEEELRA CLVDGTVLCN LLNQLSPGSM RMGGSFEPGC
101: VNIERFLAAM DEMTLPRFES LKALKASFSD DGYDKNTLSA RRRWSLPADH SKGVDSNFND GGSQFIEASE INTSHHSLQN TSTRSLFDML DRLLDESSQK
201: MNVSHVYVSI LRGIVQVVEQ RISNQAENLK NQNILFRVRE EKYRSRINVL ETLASGTTDE NEVRRKRCAP NRKGKERSNA ELSKLKQELE IVKETHEKQF
301: LELKLNAQKA KVELERQVKN SELRVVEAKE LEKLCETKTK RWEKKEQTYK RFINHQTEAL QELKATSMSL KHDVLKIGEN YFLDLTYYGI KLRGVAHAAK
401: NYQIIIEENR RLYNEVQELK GNIRVYCRIR PFLQGQNKKQ TSIEYTGENG ELVVANPLKQ GKDTYRLFKF NKVFGPESTQ EEVFLDTRPM IRSILDGYNV
501: CIFAYGQTGS GKTYTMSGPS ITSEEDRGVN YRALNDLFHL TQSRQNSVMY EVGVQMVEIY NEQVRDLLSQ DVPDASMHSV RSTEDVLELM NIGLMNRTVG
601: ATTLNEKSSR SHSVLSVHVR GVDVKTESVL RGSLHLVDLA GSERVGRSEV TGERLKEAQH INKSLSALGD VIFALAHKNP HVPYRNSKLT QVLQNSLGGQ
701: AKTLMFVQIN PDEDSYAETV STLKFAERVS GVELGAARSY KEGRDVRQLM EQVSNLKDMI AKKDEELQKF QNINGIQKRG LSKLRIVSPP RRHSLGGALT
801: NSPRRRQGPG LLGRTTSDIH RHQNESRSSS KFSGGAKDNN IFEDTELLGF EESNNEERLS DISDSCLSMG TETDGSISSG AMELTLFPET SNPPEMFEQS
901: EQNDKAHVGV GPSKPLKHTP KPDISKPSRL SISTTSSKAL TSSKRPVTGI SSSVKPLNRK R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)