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AT5G05940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.980
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ROP guanine nucleotide exchange factor 5
Curator
Summary (TAIR10)
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational
Description (TAIR10)
ROP guanine nucleotide exchange factor 5 (ROPGEF5); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 7 (TAIR:AT5G02010.1); Has 303 Blast hits to 301 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 303; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGJ8eggNOG:ENOG4110DIXEMBL:AB017060EMBL:BX832060EMBL:CP002688EnsemblPlants:AT5G05940EnsemblPlants:AT5G05940.1
entrez:830479GeneID:830479Genevisible:F4K295GO:GO:0005089GO:GO:0043547Gramene:AT5G05940.1hmmpanther:PTHR33101
hmmpanther:PTHR33101:SF4HOGENOM:HOG000238290InParanoid:F4K295InterPro:IPR005512iPTMnet:F4K295KEGG:ath:AT5G05940OMA:YLGMESK
PaxDb:F4K295Pfam:F4K295Pfam:PF03759Pfscan:PS51334PRIDE:F4K295PRO:PR:F4K295PROSITE:PS51334
ProteinModelPortal:F4K295Proteomes:UP000006548RefSeq:NP_196213.2SMR:F4K295TAIR:AT5G05940tair10-symbols:ATROPGEF5tair10-symbols:ROPGEF5
UniGene:At.50436UniProt:F4K295
Coordinates (TAIR10) chr5:+:1786028..1788363
Molecular Weight (calculated) 68468.90 Da
IEP (calculated) 9.18
GRAVY (calculated) -0.47
Length 611 amino acids
Sequence (TAIR10)
(BLAST)
001: MENLVKSCAG IEKKRSNLTP SMEDILTESK ERSSTSGASY ESSSTTTVAS SSPPPPPSQI LGWPIRKASF RKNSKESVNF DHKKLTLHDD SGFKAKEMNS
101: ADVEMMKERF AKLLLGEDMS GSGKGVCTAL AISNAITNLC ATIFGQLWRL EPLSSEKKEM WRREMEWILS VSDHIVELTP STQTYPDGNK FEVMTCRPRF
201: DLFINLPALR KLDNMLLDIL ASFKKTEFWY VDQGIVASEN DGSASFRRKI QRQEEKWWLP VPRLAPNGLT EEARTELNHK RECATQILKA AMAINSLALT
301: EMDVPKSYLE TLPKNGRSCL GDVIYRYVTS DKFSAESLLD CLDLSSEHIA LDIANRVEAS IYVWRRRVQT KLGVNNNTSS TTPKLTWEMV KELMAAGDKR
401: GLLVERSETL LRCLKQRFPS LTQTSLDISK IQWNKDIGKS ILESYSRALE SLASNIIARI DDLLYVDDLT KQSDDNNLLS SPAVSSIIAH KKVVPLPYLI
501: SASGTPYRTS FSTTPGFSPS MISPKKGERR TPYSSKDTNK IIEKGLPSRG YGVRRVLNNY LGMESKLKIC VNPSDNADTA VINQISKDVE EEKKRNSTSV
601: HQKGPPKYTV S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)