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AT4G32010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HSI2-like 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HSI2-like 1 (HSL1); CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: high-level expression of sugar-inducible gene 2 (TAIR:AT2G30470.1); Has 1397 Blast hits to 1364 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 0; Plants - 1204; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
Protein Annotations
BioGrid:14618eggNOG:ENOG410IK2JeggNOG:ENOG410Z235EMBL:AB206554EMBL:AK228013EMBL:AL021636EMBL:AL161580
EMBL:CP002687EnsemblPlants:AT4G32010EnsemblPlants:AT4G32010.1entrez:829332Gene3D:2.40.330.10GeneID:829332Genevisible:Q5CCK4
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0008270hmmpanther:PTHR23336
hmmpanther:PTHR23336:SF10HOGENOM:HOG000084353InParanoid:Q5CCK4InterPro:IPR003340InterPro:IPR011124InterPro:IPR015300KEGG:ath:AT4G32010
OMA:IVMIEDYPaxDb:Q5CCK4Pfam:PF02362Pfam:PF07496Pfam:Q5CCK4Pfscan:PS50863Pfscan:PS51050
PhylomeDB:Q5CCK4PIR:T04644PRIDE:Q5CCK4PRO:PR:Q5CCK4PROSITE:PS50863PROSITE:PS51050ProteinModelPortal:Q5CCK4
Proteomes:UP000006548RefSeq:NP_194929.2SMART:SM01019SMR:Q5CCK4STRING:3702.AT4G32010.1SUPFAM:SSF101936TAIR:AT4G32010
tair10-symbols:HSI2-L1tair10-symbols:HSL1tair10-symbols:VAL2UniGene:At.1885UniProt:Q5CCK4
Coordinates (TAIR10) chr4:+:15481231..15484897
Molecular Weight (calculated) 86017.10 Da
IEP (calculated) 7.82
GRAVY (calculated) -0.54
Length 780 amino acids
Sequence (TAIR10)
(BLAST)
001: MESIKVCMNA LCGAASTSGE WKKGWPMRSG DLASLCDKCG CAYEQSIFCE VFHAKESGWR ECNSCDKRLH CGCIASRFMM ELLENGGVTC ISCAKKSGLI
101: SMNVSHESNG KDFPSFASAE HVGSVLERTN LKHLLHFQRI DPTHSSLQMK QEESLLPSSL DALRHKTERK ELSAQPNLSI SLGPTLMTSP FHDAAVDDRS
201: KTNSIFQLAP RSRQLLPKPA NSAPIAAGME PSGSLVSQIH VARPPPEGRG KTQLLPRYWP RITDQELLQL SGQYPHLSNS KIIPLFEKVL SASDAGRIGR
301: LVLPKACAEA YFPPISLPEG LPLKIQDIKG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRTEPEGKLV MGYRKATNST ATQMFKGSSE
401: PNLNMFSNSL NPGCGDINWS KLEKSEDMAK DNLFLQSSLT SARKRVRNIG TKSKRLLIDS VDVLELKITW EEAQELLRPP QSTKPSIFTL ENQDFEEYDE
501: PPVFGKRTLF VSRQTGEQEQ WVQCDACGKW RQLPVDILLP PKWSCSDNLL DPGRSSCSAP DELSPREQDT LVRQSKEFKR RRLASSNEKL NQSQDASALN
601: SLGNAGITTT GEQGEITVAA TTKHPRHRAG CSCIVCSQPP SGKGKHKPSC TCTVCEAVKR RFRTLMLRKR NKGEAGQASQ QAQSQSECRD ETEVESIPAV
701: ELAAGENIDL NSDPGASRVS MMRLLQAAAF PLEAYLKQKA ISNTAGEQQS SDMVSTEHGS SSAAQETEKD TTNGAHDPVN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)