AT3G48480.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.535 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Cysteine proteinases superfamily protein | ||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: UB-like protease 1D (TAIR:AT1G60220.1); Has 84 Blast hits to 84 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:17957326..17959062 | ||||||||||||||||||||||||||||
Molecular Weight (calculated) | 35434.00 Da | ||||||||||||||||||||||||||||
IEP (calculated) | 7.43 | ||||||||||||||||||||||||||||
GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||
Length | 298 amino acids | ||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSRRRSNRVR NTNSKYVSSP ARVTIIDDCE EDEYLHHRTC WKHIAAALSK CGSKPKRTKE LEIFKLTAPC FYDECTRRGR SERRIKCKYL DSKLRKKLNS 101: KAFVGYLEDV WRGFSDEKKN SFVYLDCLWF SMYKSENHNI RSSVFDSVKT KQIFSKKYVF LPIVYWSHWT LLIFCNFGED LDSDKTCMLF LDSLQTTDSS 201: QRLEPDIRKF VLDIYRAEGR TEDSSLVDEI PFYVPMVPQQ TNDVECGSFV LYYIHRFIED APENFNVEDM PYFLKEDWFS HKDLEKFCDE LHSLGTIH |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)