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AT3G48480.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.535
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cysteine proteinases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: UB-like protease 1D (TAIR:AT1G60220.1); Has 84 Blast hits to 84 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5160eggNOG:KOG0779EMBL:CP002686EnsemblPlants:AT3G48480EnsemblPlants:AT3G48480.1entrez:824007GeneID:824007
GO:GO:0008234Gramene:AT3G48480.1hmmpanther:PTHR12606hmmpanther:PTHR12606:SF38InParanoid:F4JF18InterPro:IPR003653KEGG:ath:AT3G48480
OMA:GAPENFSPaxDb:F4JF18Pfam:PF02902Pfscan:PS50600PROSITE:PS50600ProteinModelPortal:F4JF18Proteomes:UP000006548
RefSeq:NP_190417.4SMR:F4JF18STRING:3702.AT3G48480.1SUPFAM:SSF54001TAIR:AT3G48480UniGene:At.53833UniProt:F4JF18
Coordinates (TAIR10) chr3:-:17957326..17959062
Molecular Weight (calculated) 35434.00 Da
IEP (calculated) 7.43
GRAVY (calculated) -0.58
Length 298 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRRRSNRVR NTNSKYVSSP ARVTIIDDCE EDEYLHHRTC WKHIAAALSK CGSKPKRTKE LEIFKLTAPC FYDECTRRGR SERRIKCKYL DSKLRKKLNS
101: KAFVGYLEDV WRGFSDEKKN SFVYLDCLWF SMYKSENHNI RSSVFDSVKT KQIFSKKYVF LPIVYWSHWT LLIFCNFGED LDSDKTCMLF LDSLQTTDSS
201: QRLEPDIRKF VLDIYRAEGR TEDSSLVDEI PFYVPMVPQQ TNDVECGSFV LYYIHRFIED APENFNVEDM PYFLKEDWFS HKDLEKFCDE LHSLGTIH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)