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AT3G27080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:24727099 (2014): mitochondrion
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:19334764 (2009): plasma membrane
  • PMID:15604729 (2004): mitochondrion
  • PMID:14730085 (2004): mitochondrion
  • PMID:11870776 (2002): mitochondrion
  • PMID:11161051 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : translocase of outer membrane 20 kDa subunit 3
Curator
Summary (TAIR10)
Component of the TOM complex involved in transport of nuclear-encoded mitochondrial proteins
Computational
Description (TAIR10)
translocase of outer membrane 20 kDa subunit 3 (TOM20-3); CONTAINS InterPro DOMAIN/s: Plant specific mitochondrial import receptor subunit TOM20 (InterPro:IPR010547); BEST Arabidopsis thaliana protein match is: translocase outer membrane 20-1 (TAIR:AT3G27070.1); Has 97 Blast hits to 97 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:7656eggNOG:ENOG410IKS7eggNOG:ENOG4111JA8EMBL:AB026649EMBL:AJ296025EMBL:AY040027EMBL:AY079411
EMBL:AY087037EMBL:CP002686EnsemblPlants:AT3G27080EnsemblPlants:AT3G27080.1entrez:822326EvolutionaryTrace:P82874Gene3D:1.25.40.10
GeneID:822326Genevisible:P82874GO:GO:0005739GO:GO:0005741GO:GO:0005742GO:GO:0005743GO:GO:0005744
GO:GO:0006626GO:GO:0015450GO:GO:0016021GO:GO:0045040Gramene:AT3G27080.1HOGENOM:HOG000005870InParanoid:P82874
IntAct:P82874InterPro:IPR010547InterPro:IPR011990iPTMnet:P82874KEGG:ath:AT3G27080OMA:IWCLGNAPaxDb:P82874
PDB:1ZU2PDBsum:1ZU2Pfam:P82874Pfam:PF06552PhylomeDB:P82874PRIDE:P82874PRO:PR:P82874
ProteinModelPortal:P82874Proteomes:UP000006548RefSeq:NP_189344.1SMR:P82874STRING:3702.AT3G27080.1SUPFAM:SSF48452SwissPalm:P82874
TAIR:AT3G27080tair10-symbols:TOM20-3TMHMM:TMhelixUniGene:At.6114UniProt:P82874
Coordinates (TAIR10) chr3:-:9985212..9986560
Molecular Weight (calculated) 22566.60 Da
IEP (calculated) 4.69
GRAVY (calculated) -0.42
Length 202 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTETEFDRI LLFEQIRQDA ENTYKSNPLD ADNLTRWGGV LLELSQFHSI SDAKQMIQEA ITKFEEALLI DPKKDEAVWC IGNAYTSFAF LTPDETEAKH
101: NFDLATQFFQ QAVDEQPDNT HYLKSLEMTA KAPQLHAEAY KQGLGSQPMG RVEAPAPPSS KAVKNKKSSD AKYDAMGWVI LAIGVVAWIS FAKANVPVSP
201: PR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)