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AT3G23167.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : low-molecular-weight cysteine-rich 39
Curator
Summary (TAIR10)
Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.
Computational
Description (TAIR10)
low-molecular-weight cysteine-rich 39 (LCR39); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 40 (TAIR:AT2G14935.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
EMBL:AB025608EMBL:CP002686EnsemblPlants:AT3G23167EnsemblPlants:AT3G23167.1entrez:3768907GeneID:3768907GO:GO:0005576
GO:GO:0031640GO:GO:0050832Gramene:AT3G23167.1HOGENOM:HOG000113299InParanoid:P82754KEGG:ath:AT3G23167PaxDb:P82754
Pfam:P82754PhylomeDB:P82754PRIDE:P82754PRO:PR:P82754ProteinModelPortal:P82754Proteomes:UP000006548RefSeq:NP_001030746.1
TAIR:AT3G23167tair10-symbols:LCR39UniGene:At.64542UniProt:P82754
Coordinates (TAIR10) chr3:-:8266218..8266585
Molecular Weight (calculated) 8558.46 Da
IEP (calculated) 4.93
GRAVY (calculated) 0.10
Length 77 amino acids
Sequence (TAIR10)
(BLAST)
1: MKNSSILLLL VVFFVISSSG EAKTCSDGWT CLGPKEEDKC KENCMAKHKG VGTCNLYTIP EFPAPITYYM CDCMFDC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)