suba logo
AT2G36325.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT5G03610.1); Has 3054 Blast hits to 3028 proteins in 171 species: Archae - 0; Bacteria - 250; Metazoa - 0; Fungi - 3; Plants - 2788; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
EC:3.1.1.-eggNOG:COG3240eggNOG:ENOG410JWUIEMBL:AC006921EMBL:AK221676EMBL:AY093048EMBL:AY128930
EMBL:CP002685EnsemblPlants:AT2G36325EnsemblPlants:AT2G36325.1entrez:5007939Gene3D:3.40.50.1110GeneID:5007939GO:GO:0005576
GO:GO:0016042GO:GO:0016788Gramene:AT2G36325.1hmmpanther:PTHR22835hmmpanther:PTHR22835:SF216HOGENOM:HOG000241089InParanoid:Q8RWJ4
InterPro:IPR001087InterPro:IPR013830iPTMnet:Q8RWJ4KEGG:ath:AT2G36325OMA:CCESTYKPaxDb:Q8RWJ4Pfam:PF00657
Pfam:Q8RWJ4PhylomeDB:Q8RWJ4PRIDE:Q8RWJ4PRO:PR:Q8RWJ4ProteinModelPortal:Q8RWJ4Proteomes:UP000006548RefSeq:NP_001078012.1
SUPFAM:SSF52266TAIR:AT2G36325UniGene:At.71235UniProt:Q8RWJ4
Coordinates (TAIR10) chr2:+:15231409..15233224
Molecular Weight (calculated) 39961.10 Da
IEP (calculated) 9.84
GRAVY (calculated) -0.19
Length 356 amino acids
Sequence (TAIR10)
(BLAST)
001: MNITKLTPWF LFSCLILLSD YIKVNSSISP SSEQTQEDGF FGFKPTKLFV FGDSYADTGN TPFLIVPSWR FPNGITFPGI PTGRFSDGRV STDYLAKYIG
101: VRTPITYKWG KYGRPRLAVK RGMNFAYGGA GAFETMFKLV PTASVQIDSF EQLLMRNVYS PADLNSSVAF FSIIGNDYLT YDRRNGSEEG RSALTRKVVK
201: QILLDVKRIK DLGVRKVLVA LSPPQKCLPK LVTPKGCDTN DTSTYLHNSL LRKGLIKLND KEINNNDKSF MTLDLYNAFV TIFKNKGVSG VSTFPDPFKA
301: CCATKRGTFC GDRSLSGKKL YTLCDDPKSF FFWDNVHISD QGWRSVFSLL LPDSQF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)