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AT2G32820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Transcription elongation factor (TFIIS) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transcription elongation factor (TFIIS) family protein; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617); BEST Arabidopsis thaliana protein match is: Transcription elongation factor (TFIIS) family protein (TAIR:AT2G33090.1); Has 75 Blast hits to 75 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:CP002685EnsemblPlants:AT2G32820EnsemblPlants:AT2G32820.1entrez:817843GeneID:817843GO:GO:0003677GO:GO:0003746
GO:GO:0005634GO:GO:0006351Gramene:AT2G32820.1hmmpanther:PTHR31995hmmpanther:PTHR31995:SF6InParanoid:F4IUQ8InterPro:IPR003617
InterPro:IPR017923KEGG:ath:AT2G32820OMA:EASICVDPaxDb:F4IUQ8Pfscan:PS51319PRIDE:F4IUQ8PROSITE:PS51319
ProteinModelPortal:F4IUQ8Proteomes:UP000006548RefSeq:NP_180841.2SMART:SM00509SUPFAM:SSF47676TAIR:AT2G32820UniGene:At.49365
UniProt:F4IUQ8
Coordinates (TAIR10) chr2:+:13926037..13926786
Molecular Weight (calculated) 28166.70 Da
IEP (calculated) 10.73
GRAVY (calculated) -0.64
Length 249 amino acids
Sequence (TAIR10)
(BLAST)
001: MKTFYSSGQN SSSTCNKPNP LKLKKVVKAC SELKKKNEEQ LSHGFAVLKA KKETVFLGMK KNEDERSRVH ETREMKQIGD SKSFALMRTI EKKKQSASPI
101: QGSKNPRSGA GETGVIKKIL RKPDFCCKSV PSRPPLNMKK HQPVKAFENP KTCLVLKKNS PEMLELFEMA KKSADVANAK GFLAAKEEAS ICVDILALLM
201: KFSIISTAIE TRRIMEKLER LTKHKDRKIC NAALALLHHW RQTIRNQQQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)