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AT2G27740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.995
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Family of unknown function (DUF662)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Family of unknown function (DUF662) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF662) (TAIR:AT2G36410.2); Has 1272 Blast hits to 1189 proteins in 227 species: Archae - 42; Bacteria - 139; Metazoa - 529; Fungi - 66; Plants - 146; Viruses - 5; Other Eukaryotes - 345 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXXZeggNOG:ENOG410ZCAREMBL:AC005824EMBL:AK228886EMBL:BT012525EMBL:BT014824EMBL:CP002685
EnsemblPlants:AT2G27740EnsemblPlants:AT2G27740.1entrez:817320GeneID:817320Gramene:AT2G27740.1hmmpanther:PTHR21470hmmpanther:PTHR21470:SF4
HOGENOM:HOG000239121InterPro:IPR007033KEGG:ath:AT2G27740ncoils:CoilOMA:KMEVKDRPfam:PF04949PhylomeDB:Q9ZUX5
PIR:D84676Proteomes:UP000006548RefSeq:NP_180342.1STRING:3702.AT2G27740.1TAIR:AT2G27740UniGene:At.38726UniProt:Q9ZUX5
Coordinates (TAIR10) chr2:+:11822800..11823575
Molecular Weight (calculated) 20239.50 Da
IEP (calculated) 9.07
GRAVY (calculated) -0.81
Length 174 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTRQILEQ PQSPFIQRIK SSGNISMNGS PMIDEKEEEL SQSAFALFKA KEDEIERRKM EVKDRVQKKL GLAEEATRRL AEIREELEAL TDPMRKEISA
101: IRKRVDAINR ELKPLGQSCQ RKEREFKEAL EAYNEKNKEK AIFVSKLVEL VTESEKLRMT KLEELSKSIE ISLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)