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AT1G65960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23549413 (2013): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glutamate decarboxylase 2
Curator
Summary (TAIR10)
glutamate decarboxylase (GAD2)
Computational
Description (TAIR10)
glutamate decarboxylase 2 (GAD2); CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Glutamate decarboxylase (InterPro:IPR010107), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase (TAIR:AT5G17330.1); Has 2686 Blast hits to 2683 proteins in 834 species: Archae - 189; Bacteria - 1522; Metazoa - 142; Fungi - 352; Plants - 304; Viruses - 2; Other Eukaryotes - 175 (source: NCBI BLink).
Protein Annotations
DNASU:842908EC:4.1.1.15eggNOG:COG0076eggNOG:KOG1383EMBL:AK222191EMBL:AK222219EMBL:CP002684
EnsemblPlants:AT1G65960EnsemblPlants:AT1G65960.1entrez:842908ExpressionAtlas:Q56W28Gene3D:3.40.640.10GeneID:842908GO:GO:0004351
GO:GO:0006536GO:GO:0030170Gramene:AT1G65960.1gramene_pathway:4.1.1.15gramene_pathway:PWY-4321hmmpanther:PTHR11999hmmpanther:PTHR11999:SF113
HOGENOM:HOG000070228InterPro:IPR002129InterPro:IPR010107InterPro:IPR015421InterPro:IPR015424KEGG:00250+4.1.1.15KEGG:00410+4.1.1.15
KEGG:00430+4.1.1.15KEGG:00650+4.1.1.15Pfam:PF00282Proteomes:UP000006548RefSeq:NP_176771.2SMR:Q56W28STRING:3702.AT1G65960.2
SUPFAM:SSF53383TAIR:AT1G65960tair10-symbols:GAD2TIGRfam:TIGR01788TIGRFAMs:TIGR01788UniGene:At.19149UniGene:At.20543
UniGene:At.24993UniGene:At.66846UniProt:Q56W28
Coordinates (TAIR10) chr1:+:24555868..24557253
Molecular Weight (calculated) 41754.60 Da
IEP (calculated) 6.42
GRAVY (calculated) -0.21
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MLAGLAFKRK WQNKRKAEGK PYDKPNIVTG ANVQVCWEKF ARYFEVELKE VNLSEGYYVM DPDKAAEMVD ENTICVAAIL GSTLNGEFED VKRLNDLLVK
101: KNEETGWNTP IHVDAASGGF IAPFIYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVVW RAAEDLPEEL IFHINYLGAD QPTFTLNFSK GSSQIIAQYY
201: QLIRLGFEGY KNVMENCIEN MVVLKEGIEK TERFNIVSKD QGVPVVAFSL KDHSFHNEFE ISEMLRRFGW IVPAYTMPAD AQHITVLRVV IREDFSRTLA
301: ERLVADISKV LHELDTLPSK ISKKMGIEGI AENVKEKKME KEILMEVIVG WRKFVKERKK MNGVC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)