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AT1G65010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22318864 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF827)
Curator
Summary (TAIR10)
Putative role in flower development. Comparison of SALK_061426C to Columbia wild type in normal lighting and under low light of 33 micromoles per meter-squared per second resulted in a trend toward earlier bolting in the mutant under low light (P=0.055) (Ann Stapleton and Patrick Pridgen, 2009, personal communication).
Computational
Description (TAIR10)
INVOLVED IN: flower development; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT4G27595.1); Has 334261 Blast hits to 142886 proteins in 4027 species: Archae - 5350; Bacteria - 88202; Metazoa - 120091; Fungi - 23018; Plants - 18141; Viruses - 1798; Other Eukaryotes - 77661 (source: NCBI BLink).
Protein Annotations
BioGrid:28030eggNOG:ENOG410IKUHeggNOG:ENOG410Y9W9EMBL:AC006193EMBL:CP002684EnsemblPlants:AT1G65010EnsemblPlants:AT1G65010.1
entrez:842809GeneID:842809Genevisible:F4I8B9GO:GO:0005875GO:GO:0009507Gramene:AT1G65010.1hmmpanther:PTHR23160
HOGENOM:HOG000239041InParanoid:F4I8B9iPTMnet:F4I8B9KEGG:ath:AT1G65010ncoils:CoilOMA:CIAKEEAPaxDb:F4I8B9
Pfam:F4I8B9PIR:F96673PRIDE:F4I8B9PRO:PR:F4I8B9ProteinModelPortal:F4I8B9Proteomes:UP000006548RefSeq:NP_176681.4
STRING:3702.AT1G65010.1TAIR:AT1G65010UniGene:At.35936UniGene:At.74852UniProt:F4I8B9
Coordinates (TAIR10) chr1:+:24149543..24154024
Molecular Weight (calculated) 152710.00 Da
IEP (calculated) 4.61
GRAVY (calculated) -0.90
Length 1345 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASRTKTGLM ETPRSKPSPP PPRLSKLSAS KSDSNSASPV PNTRLSLDRS PPTVNSKPTP DRRPSRIPTP EKVHSRLVKG TELQTQLNQI QEDLKKADEQ
0101: IELLKKDKAK AIDDLKESEK LVEEANEKLK EALAAQKRAE ESFEVEKFRA VELEQAGLEA VQKKDVTSKN ELESIRSQHA LDISALLSTT EELQRVKHEL
0201: SMTADAKNKA LSHAEEATKI AEIHAEKAEI LASELGRLKA LLGSKEEKEA IEGNEIVSKL KSEIELLRGE LEKVSILESS LKEQEGLVEQ LKVDLEAAKM
0301: AESCTNSSVE EWKNKVHELE KEVEESNRSK SSASESMESV MKQLAELNHV LHETKSDNAA QKEKIELLEK TIEAQRTDLE EYGRQVCIAK EEASKLENLV
0401: ESIKSELEIS QEEKTRALDN EKAATSNIQN LLDQRTELSI ELERCKVEEE KSKKDMESLT LALQEASTES SEAKATLLVC QEELKNCESQ VDSLKLASKE
0501: TNEKYEKMLE DARNEIDSLK STVDSIQNEF ENSKAGWEQK ELHLMGCVKK SEEENSSSQE EVSRLVNLLK ESEEDACARK EEEASLKNNL KVAEGEVKYL
0601: QETLGEAKAE SMKLKESLLD KEEDLKNVTA EISSLREWEG SVLEKIEELS KVKESLVDKE TKLQSITQEA EELKGREAAH MKQIEELSTA NASLVDEATK
0701: LQSIVQESED LKEKEAGYLK KIEELSVANE SLADNVTDLQ SIVQESKDLK EREVAYLKKI EELSVANESL VDKETKLQHI DQEAEELRGR EASHLKKIEE
0801: LSKENENLVD NVANMQNIAE ESKDLREREV AYLKKIDELS TANGTLADNV TNLQNISEEN KELRERETTL LKKAEELSEL NESLVDKASK LQTVVQENEE
0901: LRERETAYLK KIEELSKLHE ILSDQETKLQ ISNHEKEELK ERETAYLKKI EELSKVQEDL LNKENELHGM VVEIEDLRSK DSLAQKKIEE LSNFNASLLI
1001: KENELQAVVC ENEELKSKQV STLKTIDELS DLKQSLIHKE KELQAAIVEN EKLKAEAALS LQRIEELTNL KQTLIDKQNE LQGVFHENEE LKAKEASSLK
1101: KIDELLHLEQ SWLEKESEFQ RVTQENLELK TQDALAAKKI EELSKLKESL LEKETELKCR EAAALEKMEE PSKHGNSELN SIGKDYDLVQ FSEVNGASNG
1201: DEKTKTDHYQ QRSREHMIQE SPMEAIDKHL MGERAAIHKV AHRVEGERNV EKESEFKMWD SYKIEKSEVS PERETELDSV EEEVDSKAES SENMDQYSNG
1301: FSLTDHTEDS GNLLLKEQHM KKKKPLLRKF GNLLKKKSTS SSSQK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)