AT1G51965.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : ABA Overly-Sensitive 5 | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes ABA Overly-Sensitive5 (ABO5), a pentatricopeptide repeat protein required for cis-splicing of mitochondrial nad2 intron 3. Involved in response to abscisic acid. | ||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
ABA Overly-Sensitive 5 (ABO5); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: proton gradient regulation 3 (TAIR:AT4G31850.1); Has 51797 Blast hits to 15079 proteins in 304 species: Archae - 5; Bacteria - 58; Metazoa - 616; Fungi - 900; Plants - 48174; Viruses - 0; Other Eukaryotes - 2044 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:19312078..19314145 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 73882.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.48 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 650 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKLLRRRFFN SVNTITRPNR RHYATKYVAK VTSSSPSGRS LSAEVSLPNP LPADVRGYPL PRRHLICRAT NLITGASNLS DAFSDLSDYL SSLSLSLTPD 101: EASEILKSLN SPLLAVEFFK LVPSLCPYSQ NDPFLYNRII LILSRSNLPD RFDRVRSILD SMVKSNVHGN ISTVNILIGF FGNTEDLQMC LRLVKKWDLK 201: MNSFTYKCLL QAYLRSRDYS KAFDVYCEIR RGGHKLDIFA YNMLLDALAK DEKACQVFED MKKRHCRRDE YTYTIMIRTM GRIGKCDEAV GLFNEMITEG 301: LTLNVVGYNT LMQVLAKGKM VDKAIQVFSR MVETGCRPNE YTYSLLLNLL VAEGQLVRLD GVVEISKRYM TQGIYSYLVR TLSKLGHVSE AHRLFCDMWS 401: FPVKGERDSY MSMLESLCGA GKTIEAIEML SKIHEKGVVT DTMMYNTVFS ALGKLKQISH IHDLFEKMKK DGPSPDIFTY NILIASFGRV GEVDEAINIF 501: EELERSDCKP DIISYNSLIN CLGKNGDVDE AHVRFKEMQE KGLNPDVVTY STLMECFGKT ERVEMAYSLF EEMLVKGCQP NIVTYNILLD CLEKNGRTAE 601: AVDLYSKMKQ QGLTPDSITY TVLERLQSVS HGKSRIRRKN PITGWVVSPL |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)