suba logo
AT1G31550.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G28600.1); Has 3220 Blast hits to 3174 proteins in 146 species: Archae - 0; Bacteria - 172; Metazoa - 0; Fungi - 2; Plants - 3044; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT1G31550EnsemblPlants:AT1G31550.1entrez:840045hmmpanther:PTHR22835hmmpanther:PTHR22835:SF189Pfam:PF00657
Coordinates (TAIR10) chr1:-:11295635..11297284
Molecular Weight (calculated) 43098.60 Da
IEP (calculated) 5.54
GRAVY (calculated) 0.01
Length 391 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLDSHVLM KLGSLFLSTL FVSIVSSESQ CRNFESIISF GDSIADTGNL LGLSDHNNLP MSAFPPYGET FFHHPTGRFS DGRLIIDFIA EFLGLPYVPP
101: YFGSTNGNFE KGVNFAVASA TALESSFLEE KGYHCPHNFS LGVQLKIFKQ SLPNLCGLPS DCRDMIGNAL ILMGEIGAND YNFPFFQLRP LDEVKELVPL
201: VISTISSAIT ELIGMGGRTF LVPGGFPLGC SVAFLTLHQT SNMEEYDPLT GCLKWLNKFG EYHSEQLQEE LNRLRKLNPH VNIIYADYYN ASLRLGREPR
301: FINRHLSACC GVGGPYNFNL SRSCGSVGVE ACSDPSKYVA WDGLHMTEAA HKSMADGLVK GPYAIPPFDW SCLSSMIKKK EVVGNTIFFD E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)