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AT1G16430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Surfeit locus protein 5 subunit 22 of Mediator complex
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Surfeit locus protein 5 subunit 22 of Mediator complex; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med22 (InterPro:IPR009332); BEST Arabidopsis thaliana protein match is: Surfeit locus protein 5 subunit 22 of Mediator complex (TAIR:AT1G07950.1); Has 238 Blast hits to 238 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 12; Plants - 53; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
BioGrid:23453eggNOG:ENOG410XS6UeggNOG:KOG3304EMBL:AC006341EMBL:AK117750EMBL:AY085301EMBL:BT003677
EMBL:CP002684EnsemblPlants:AT1G16430EnsemblPlants:AT1G16430.1entrez:838213GeneID:838213Genevisible:Q9SA42GO:GO:0001104
GO:GO:0006351GO:GO:0016592Gramene:AT1G16430.1hmmpanther:PTHR12434HOGENOM:HOG000006377InParanoid:Q9SA42IntAct:Q9SA42
InterPro:IPR009332KEGG:ath:AT1G16430KO:K15139ncoils:CoilOMA:MVHAADSPANTHER:PTHR12434PaxDb:Q9SA42
Pfam:PF06179Pfam:Q9SA42PhylomeDB:Q9SA42PIR:F86299PRIDE:Q9SA42PRO:PR:Q9SA42ProteinModelPortal:Q9SA42
Proteomes:UP000006548RefSeq:NP_563997.1STRING:3702.AT1G16430.1TAIR:AT1G16430UniGene:At.41882UniProt:Q9SA42
Coordinates (TAIR10) chr1:+:5614632..5615397
Molecular Weight (calculated) 16180.10 Da
IEP (calculated) 5.23
GRAVY (calculated) -0.35
Length 150 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNKGGGSGG GSGPTAAAAA AALQKQKALL QRVDTDITSV VDNFNQIVNV ARVSDPPMKN SQEAYMMEMR ASRLVQAADS LLKLVSELKQ TAIFSGFASL
101: NDHVEQRIAE FDQEAEKTNR LLARIADDAS ASLKELESHY YSSAQRSTLD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)