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AT5G65520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYTSeggNOG:ENOG410YKJ1EMBL:AB026639EMBL:AK119033
EMBL:BT005632EMBL:CP002688EnsemblPlants:AT5G65520EnsemblPlants:AT5G65520.1
entrez:836678Gene3D:1.25.40.10GeneID:836678GO:GO:0016021
Gramene:AT5G65520.1hmmpanther:PTHR26312hmmpanther:PTHR26312:SF71HOGENOM:HOG000077418
InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734KEGG:ath:AT5G65520
OMA:NQANSHFPfam:PF13181Pfscan:PS50005Pfscan:PS50293
PhylomeDB:Q9LSM3PROSITE:PS50005PROSITE:PS50293Proteomes:UP000006548
RefSeq:NP_201355.1SUPFAM:SSF48452TAIR:AT5G65520TMHMM:TMhelix
UniGene:At.43470UniProt:Q9LSM3
Coordinates (TAIR10) chr5:-:26189876..26190496
Molecular Weight (calculated) 22803.70 Da
IEP (calculated) 10.82
GRAVY (calculated) -0.17
Length 206 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTETIIQG AILVLTLVMF WAIKYLSQRG LTKFRTKHRA TLQTQRQLIQ ASRLLARART TPKKSQSQSL AKTALTEADN VIAISPDDAA GHIVRALALD
101: LLGHHTSALK SFDMALTYPR LKSLSVGERA DALVKRAEMK LAVNRRRRID SAVEDLEEAV RLAAGTDTAR LFRLLGECYE FKGLKEKAQW AFNEALKAQP
201: SSVNGT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)