AT5G55840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G59900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:22598038..22601688 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 126673.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.84 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.07 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1136 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSGLSSLVSH RNGAISLLQL SFSKFGCFSR VWFSSGAVKT SKRDDSASHQ AFGVSGFDME KSIYNILTID RWGSLNHMDY RQARLRLVHG KLALKFLKWV 0101: VKQPGLETDH IVQLVCITTH ILVRARMYDP ARHILKELSL MSGKSSFVFG ALMTTYRLCN SNPSVYDILI RVYLREGMIQ DSLEIFRLMG LYGFNPSVYT 0201: CNAILGSVVK SGEDVSVWSF LKEMLKRKIC PDVATFNILI NVLCAEGSFE KSSYLMQKME KSGYAPTIVT YNTVLHWYCK KGRFKAAIEL LDHMKSKGVD 0301: ADVCTYNMLI HDLCRSNRIA KGYLLLRDMR KRMIHPNEVT YNTLINGFSN EGKVLIASQL LNEMLSFGLS PNHVTFNALI DGHISEGNFK EALKMFYMME 0401: AKGLTPSEVS YGVLLDGLCK NAEFDLARGF YMRMKRNGVC VGRITYTGMI DGLCKNGFLD EAVVLLNEMS KDGIDPDIVT YSALINGFCK VGRFKTAKEI 0501: VCRIYRVGLS PNGIIYSTLI YNCCRMGCLK EAIRIYEAMI LEGHTRDHFT FNVLVTSLCK AGKVAEAEEF MRCMTSDGIL PNTVSFDCLI NGYGNSGEGL 0601: KAFSVFDEMT KVGHHPTFFT YGSLLKGLCK GGHLREAEKF LKSLHAVPAA VDTVMYNTLL TAMCKSGNLA KAVSLFGEMV QRSILPDSYT YTSLISGLCR 0701: KGKTVIAILF AKEAEARGNV LPNKVMYTCF VDGMFKAGQW KAGIYFREQM DNLGHTPDIV TTNAMIDGYS RMGKIEKTND LLPEMGNQNG GPNLTTYNIL 0801: LHGYSKRKDV STSFLLYRSI ILNGILPDKL TCHSLVLGIC ESNMLEIGLK ILKAFICRGV EVDRYTFNML ISKCCANGEI NWAFDLVKVM TSLGISLDKD 0901: TCDAMVSVLN RNHRFQESRM VLHEMSKQGI SPESRKYIGL INGLCRVGDI KTAFVVKEEM IAHKICPPNV AESAMVRALA KCGKADEATL LLRFMLKMKL 1001: VPTIASFTTL MHLCCKNGNV IEALELRVVM SNCGLKLDLV SYNVLITGLC AKGDMALAFE LYEEMKGDGF LANATTYKAL IRGLLARETA FSGADIILKD 1101: LLARGFITSM SLSQDSHRNL KMAMEKLKAL QSNKKD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)