suba logo
AT5G52370.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYITeggNOG:ENOG410Y5GGEMBL:AB019226EMBL:AY034962
EMBL:AY062973EMBL:CP002688EnsemblPlants:AT5G52370EnsemblPlants:AT5G52370.1
entrez:835313GeneID:835313GO:GO:0003735GO:GO:0005739
Gramene:AT5G52370.1hmmpanther:PTHR35316hmmpanther:PTHR35316:SF1HOGENOM:HOG000083265
InterPro:IPR032053KEGG:ath:AT5G52370OMA:FLPNWGLPfam:PF16053
PhylomeDB:Q9FHC3Proteomes:UP000006548RefSeq:NP_568770.1SMR:Q9FHC3
STRING:3702.AT5G52370.1TAIR:AT5G52370UniGene:At.26475UniProt:Q9FHC3
Coordinates (TAIR10) chr5:-:21260558..21261203
Molecular Weight (calculated) 15764.10 Da
IEP (calculated) 11.10
GRAVY (calculated) -0.49
Length 142 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMTLINRAI SRTETVGAFR LSLNLLRNFS AAPASENPSS DSSKPKRRKK KNLIEVAQFL PNWGIGYHMA KAHWNGISYE ITKINLYKDG RHGKAWGIVH
101: KDGLRAAEAP KKISGVHKRC WKYIPNLSKT APATTSAHVQ AA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)