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AT5G41570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : WRKY DNA-binding protein 24
Curator
Summary (TAIR10)
member of WRKY Transcription Factor; Group II-c
Computational
Description (TAIR10)
WRKY DNA-binding protein 24 (WRKY24); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 56 (TAIR:AT1G64000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19410eggNOG:ENOG410IY80eggNOG:ENOG410YINNEMBL:AB005233
EMBL:AF404864EMBL:BT004595EMBL:CP002688EnsemblPlants:AT5G41570
EnsemblPlants:AT5G41570.1entrez:834159Gene3D:2.20.25.80GeneID:834159
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0043565
Gramene:AT5G41570.1hmmpanther:PTHR31221hmmpanther:PTHR31221:SF7HOGENOM:HOG000237589
InParanoid:Q9FFS3IntAct:Q9FFS3InterPro:IPR003657KEGG:ath:AT5G41570
OMA:PPENDQIPaxDb:Q9FFS3Pfam:PF03106Pfam:Q9FFS3
Pfscan:PS50811PhylomeDB:Q9FFS3PRIDE:Q9FFS3PRO:PR:Q9FFS3
PROSITE:PS50811ProteinModelPortal:Q9FFS3Proteomes:UP000006548RefSeq:NP_198972.1
SMART:SM00774SMR:Q9FFS3STRING:3702.AT5G41570.1SUPFAM:0050605
SUPFAM:SSF118290TAIR:AT5G41570tair10-symbols:ATWRKY24tair10-symbols:WRKY24
UniGene:At.26512UniProt:Q0WTM6UniProt:Q9FFS3
Coordinates (TAIR10) chr5:+:16624220..16625689
Molecular Weight (calculated) 20813.60 Da
IEP (calculated) 8.47
GRAVY (calculated) -0.89
Length 179 amino acids
Sequence (TAIR10)
(BLAST)
001: MDREDINPML SRLDVENNNT FSSFVDKTLM MMPPSTFSGE VEPSSSSSWY PESFHVHAPP LPPENDQIGE KGKELKEKRS RKVPRIAFHT RSDDDVLDDG
101: YRWRKYGQKS VKHNAHPRSY YRCTYHTCNV KKQVQRLAKD PNVVVTTYEG VHNHPCEKLM ETLNPLLRQL QFLSSFSNL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)