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AT5G26622.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.957
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Beta-galactosidase related protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Beta-galactosidase related protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 35 protein (TAIR:AT3G44070.1); Has 72 Blast hits to 70 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:CP002688EMBL:DQ487629EnsemblPlants:AT5G26622EnsemblPlants:AT5G26622.1
entrez:3770734ExpressionAtlas:Q2V346GeneID:3770734GO:GO:0016021
Gramene:AT5G26622.1HOGENOM:HOG000129999OMA:SHEFALLPhylomeDB:Q2V346
Proteomes:UP000006548RefSeq:NP_001031945.1TAIR:AT5G26622TMHMM:TMhelix
UniGene:At.49812UniGene:At.75347UniProt:Q2V346
Coordinates (TAIR10) chr5:-:9356004..9356891
Molecular Weight (calculated) 33717.60 Da
IEP (calculated) 8.80
GRAVY (calculated) 0.46
Length 295 amino acids
Sequence (TAIR10)
(BLAST)
001: MESMVCGRHL ISYHTSLLCL LNIYLKTCPL ESPRSSIKVS QSLKKTLSDS LHYHGRLQWL RQRGTMISAP RSGDYRCFLN HVSSYPLLTV FSLVQFAMVH
101: SAIFVKLRFM FCLYVLDRLQ NVCGFLNLHG SFHVREDPPI LLQLITYLLQ TLCVASSYTL SHEFALLKIF GISSLTHPCD INIFVQTSAK ALRCVVLLVQ
201: TRRLPLAPSS TPFRLLTLAI RSSNDLFLEE ASTTFDLTCS TKLLTFWFKA LKDHLPSTSC YLVIFLVLTL GYALYYCAFN FGISDFSYLY ICYLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)