AT5G15070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.975 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Phosphoglycerate mutase-like family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Phosphoglycerate mutase-like family protein; FUNCTIONS IN: oxidoreductase activity, transition metal ion binding, acid phosphatase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-2 (InterPro:IPR000560), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase-like family protein (TAIR:AT3G01310.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:4876898..4885615 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 118789.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.09 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||
| Length | 1049 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGVEEGAGVD KKITIGVCVM EKKVFSAPMG QIMDRIHAFG EFEIIHFGDK VILEDPVESW PICDCLIAFY SSGYPLEKVQ AYSSLRKPFL VNELDPQYLL 0101: HDRRKVYEHL EMYGIPVPRY ACVNRKVPDE DLDYFVEEED FVEVKGERFW KPFVEKPVNG DDHSIMIYYP SSAGGGMKEL FRKVGNRSSE FHPDVRRVRR 0201: EGSYIYEEFM PTGGTDVKVY TVGPEYAHAE ARKSPVVDGV VMRNPDGKEV RYPVLLTPAE KQMAREVCIA FRQAVCGFDL LRSEGSSYVC DVNGWSFVKN 0301: SYKYYDDAAC VLRKMFLDAK APHLSSTIPP ILPWKINEPV QSNEGLTRQG SGIIGTFGQS EELRCVIAIV RHGDRTPKQK VKLKVTEEKL LNLMLKYNGG 0401: KPRAETKLKT AVQLQDLLDA TRMLIPRARS GESDSDAEDL EHADKLRQVK AVLEEGGHFS GIYRKVQLKP LKWVNVPKSD GEGEEERPVE ALMVLKYGGV 0501: LTHAGRKQAE ELGRYFRNNM YPGEGTGLLR LHSTYRHDLK IYSSDEGRVQ MSAAAFAKGL LDLEGQLTPI LVSLVSKDSS MLDGLDNASS EMEAAKAQLN 0601: EIITAGSKMV HDHVSSELPW MTDGAGLPPH ADEHLPELVK LAKKVTEQVR LLAQDEHENL AEPSAYDVVP PYDQAKALGK SNIDVGRIAA GLPCGSEGFL 0701: LMFARWRKLE RDLYNERRER FDITQIPDVY DSCKYDLLHN SHLDLKGLDE LFKVAQLLAD GVIPNEYGIN PQQKLKIGSK IARRLLGKIL IDLRNTREEA 0801: MSVAELKNSQ DQVSVSLYSS RKEDRYSQPK LFVKSDELRR PSTGENKEED DDKETKYRLD PKYANVMTPE RHVRTRLYFT SESHIHSLMN VLRYCNLDES 0901: LQGEESLVCQ SALDRLCKTK ELDYMSYVVL RLFENTEISL DDPKRFRIEL TFSRGADLSP LEKKDEEAES LLREHTLPIM GPERLQEVGS CLTLETMEKM 1001: IRPFAMPAED FPPPCTPAGF SGYFSKSAAV LERLVKLWPF HKNTSNGKS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)