AT5G13640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : phospholipid:diacylglycerol acyltransferase | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
arabidopsis phospholipid:diacylglycerol acyltransferase (PDAT) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
phospholipid:diacylglycerol acyltransferase (PDAT); FUNCTIONS IN: phosphatidylcholine-sterol O-acyltransferase activity, phospholipid:diacylglycerol acyltransferase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endoplasmic reticulum, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386); BEST Arabidopsis thaliana protein match is: Lecithin:cholesterol acyltransferase family protein (TAIR:AT3G44830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:4393529..4397213 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74160.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.96 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 671 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPLIHRKKPT EKPSTPPSEE VVHDEDSQKK PHESSKSHHK KSNGGGKWSC IDSCCWFIGC VCVTWWFLLF LYNAMPASFP QYVTERITGP LPDPPGVKLK 101: KEGLKAKHPV VFIPGIVTGG LELWEGKQCA DGLFRKRLWG GTFGEVYKRP LCWVEHMSLD NETGLDPAGI RVRAVSGLVA ADYFAPGYFV WAVLIANLAH 201: IGYEEKNMYM AAYDWRLSFQ NTEVRDQTLS RMKSNIELMV STNGGKKAVI VPHSMGVLYF LHFMKWVEAP APLGGGGGPD WCAKYIKAVM NIGGPFLGVP 301: KAVAGLFSAE AKDVAVARAI APGFLDTDIF RLQTLQHVMR MTRTWDSTMS MLPKGGDTIW GGLDWSPEKG HTCCGKKQKN NETCGEAGEN GVSKKSPVNY 401: GRMISFGKEV AEAAPSEINN IDFRGAVKGQ SIPNHTCRDV WTEYHDMGIA GIKAIAEYKV YTAGEAIDLL HYVAPKMMAR GAAHFSYGIA DDLDDTKYQD 501: PKYWSNPLET KLPNAPEMEI YSLYGVGIPT ERAYVYKLNQ SPDSCIPFQI FTSAHEEDED SCLKAGVYNV DGDETVPVLS AGYMCAKAWR GKTRFNPSGI 601: KTYIREYNHS PPANLLEGRG TQSGAHVDIM GNFALIEDIM RVAAGGNGSD IGHDQVHSGI FEWSERIDLK L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)