AT5G12950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Putative glycosyl hydrolase of unknown function (DUF1680) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: catalytic activity; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: stem, male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1680 (InterPro:IPR012878), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: Putative glycosyl hydrolase of unknown function (DUF1680) (TAIR:AT5G12960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:4093117..4096806 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 96241.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.14 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||
| Length | 861 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKSGLIITIA LLLYTSSFVL VSVAKECTNT PTQLSSHTFR SELLQSKNET LKTELFSHYH LTPADDSAWS SLLPRKMLKE EADEFAWTML YRKFKDSNSS 101: GNFLKDVSLH DVRLDPDSFH WRAQQTNLEY LLMLDVDGLA WSFRKEAGLD APGDYYGGWE RPDSELRGHF VGHYLSATAY MWASTHNDTL KEKMSALVSA 201: LSECQQKSGT GYLSAFPSSF FDRFEAITPV WAPYYTIHKI LAGLVDQYKL AGNSQALKMA TGMADYFYGR VRNVIRKYSV ERHWQSLNEE TGGMNDVLYQ 301: LYSITGDSKY LLLAHLFDKP CFLGVLAIQA DDISGFHANT HIPIVVGSQQ RYEITGDLLH KEISMFFMDI FNASHSYATG GTSVSEFWQD PKRMATALQT 401: ENEESCTTYN MLKVSRNLFR WTKEVSYADY YERALTNGVL GIQRGTQPGL MIYMLPLGKG VSKAVTYHGW GTPYDSFWCC YGTGIESFSK LGDSIYFQED 501: GATPALYVTQ YISSSLDWKS AGLSISQKVN PVVSWDPYMR VTFTLSSSKV GVAKESTLNL RIPVWTNSIG AKVSLNGRPL NVPTSGNFLS IKQKWKSGDQ 601: VTMELPMSIR TEAIKDDRPE YASLQAILYG PYLLAGHTSR DWSITTQAKP GKWITPIPET QNSYLVTLSQ QSGNVSYVFS NSNQTITMRV SPEPGTQDAV 701: AATFRLVTDN SKPRISGPEG LIGRLVMLEP FDFPGMIVKQ ATDSSLTVQA SSPSDKGASS FRLVSGLDGK LGSVSLRLES KKGCFVYSDQ TLKQGTKLRL 801: ECGSDATDEK FKEAASFSLK TGMHQYNPMS FVMSGTQRNF VLSPLFSLRD ETYNVYFSVQ T |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)