AT5G06940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat receptor-like protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat receptor-like protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: HAESA-like 1 (TAIR:AT1G28440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2148078..2150771 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 95687.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.28 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.04 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 872 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATRFKHQFS ISLALTFFFF FTKTFSFTEN EELGNLLRFK ASFDDPKGSL SGWFNTSSSH HCNWTGITCT RAPTLYVSSI NLQSLNLSGE ISDSICDLPY 101: LTHLDLSLNF FNQPIPLQLS RCVTLETLNL SSNLIWGTIP DQISEFSSLK VIDFSSNHVE GMIPEDLGLL FNLQVLNLGS NLLTGIVPPA IGKLSELVVL 201: DLSENSYLVS EIPSFLGKLD KLEQLLLHRS GFHGEIPTSF VGLTSLRTLD LSLNNLSGEI PRSLGPSLKN LVSLDVSQNK LSGSFPSGIC SGKRLINLSL 301: HSNFFEGSLP NSIGECLSLE RLQVQNNGFS GEFPVVLWKL PRIKIIRADN NRFTGQVPES VSLASALEQV EIVNNSFSGE IPHGLGLVKS LYKFSASQNR 401: FSGELPPNFC DSPVLSIVNI SHNRLLGKIP ELKNCKKLVS LSLAGNAFTG EIPPSLADLH VLTYLDLSDN SLTGLIPQGL QNLKLALFNV SFNGLSGEVP 501: HSLVSGLPAS FLQGNPELCG PGLPNSCSSD RSNFHKKGGK ALVLSLICLA LAIATFLAVL YRYSRKKVQF KSTWRSEFYY PFKLTEHELM KVVNESCPSG 601: SEVYVLSLSS GELLAVKKLV NSKNISSKSL KAQVRTIAKI RHKNITRILG FCFKDEMIFL IYEFTQNGSL HDMLSRAGDQ LPWSIRLKIA LGVAQALAYI 701: SKDYVPHLLH RNLKSANIFL DKDFEPKLSD FALDHIVGET AFQSLVHANT NSCYTAPENH YSKKATEDMD VYSFGVVLLE LVTGQSAEKA EEGSSGESLD 801: IVKQVRRKIN LTDGAAQVLD QKILSDSCQS DMRKTLDIAL DCTAVAAEKR PSLVKVIKLL EGISSSVSPV SA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)