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AT5G03450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03750.1); Has 6680 Blast hits to 3674 proteins in 290 species: Archae - 4; Bacteria - 114; Metazoa - 3367; Fungi - 525; Plants - 736; Viruses - 186; Other Eukaryotes - 1748 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPPEeggNOG:KOG1645EMBL:AL162751EMBL:BT046178
EMBL:CP002688EnsemblPlants:AT5G03450EnsemblPlants:AT5G03450.1entrez:831835
Gene3D:2.130.10.10Gene3D:3.30.40.10GeneID:831835GO:GO:0008270
Gramene:AT5G03450.1hmmpanther:PTHR16047hmmpanther:PTHR16047:SF7HOGENOM:HOG000243562
InterPro:IPR001841InterPro:IPR013083InterPro:IPR015943KEGG:ath:AT5G03450
KO:K15691ncoils:CoilOMA:VASQEKYPfam:PF13639
Pfscan:PS50089PhylomeDB:Q9LZE2PIR:T48369PROSITE:PS50089
Proteomes:UP000006548RefSeq:NP_195965.2SMART:SM00184SMR:Q9LZE2
STRING:3702.AT5G03450.1SUPFAM:0046204SUPFAM:SSF57850TAIR:AT5G03450
UniGene:At.33275UniProt:Q9LZE2
Coordinates (TAIR10) chr5:-:858954..862238
Molecular Weight (calculated) 69872.50 Da
IEP (calculated) 5.56
GRAVY (calculated) -0.53
Length 630 amino acids
Sequence (TAIR10)
(BLAST)
001: MPPRRSYPFS GHGGTIARFI EFGEAFGHYG EEEDEEEEDE EEAYVDYGEV QEEDEEEEEE EDSERQTREY IDVLDSPVRV SQNESEGIEN QNRSQGVCSS
101: SSGSQEDVEW KQGDTEGLSC SICMEVWTSG GQHQVCCLPC GHLYGYSCIN KWFQQRRSGG KCPLCNKICS LRDVRKIYAS RVAAVDDEAH KRILFLEAKL
201: RSIEQKTASW SNKEVQWKIT EAELRLEVTK LKKKIANMES TTKGSQSQSN VASQEKYIPA HNIYQEHHGQ SPSCSFRHQG DLLINGGRIF DIDGGRQILL
301: YARRLSGVGG TFVLTQMSLH SPCEIDDILL PRTTRAIKDL HLSPHNNGLA VFGSLGKKLS VISLESHNTV LSYDLPAAPW SCSWDLKSSH HIYAGLQNGM
401: VLIFDMRQTT GPFASMTGLT TNPVHTVHHL SGNSTPTSDV RTLLSASSIG LCQWNISGSE GSPSLVSETG NPGVCISSSY CPRSNHIVAS YRPRVGSSDD
501: TVPTQPSLTQ TGVSNSNSNG VDGFHVCHKR RGVDSYYQKL SSTQAIVDPI RLPRTAIIDF GGERKQLFAS CDESTRELIL QDPSTFTISQ RLPLSSHLPL
601: QDVKYCHVNG SDLLGLLTDD RLQILRNESP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)