AT4G39420.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.904 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; Has 46 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:18339731..18354701 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 280348.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.54 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||
| Length | 2513 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEKLVKEGPT LLQLHKWEPS QFQLKLSEFR EAFISPSRQL LLLLSYHSEA LLLPLVAGRS IGSEVSLSGD NEELNSPSCS GGSDPEKIES PCGSGVGSGW 0101: DLKIVRLRRL QMALDYLKYD DINESLKMLG NVKLAEEGML RVLFSAVYLL SRKDRNDNEI SAVSRLLGLA TMFATEMIRR YGLLEYRKDV YMFDSKPRTQ 0201: ILSLPAVSLN IDVMENSRRL SEMGYLLEIT RNIQSRITRK FKKLGKGNNE KSLNLVDPNS LQDDSQLEIV PDPASAESRQ LDTSLFDTNE ELALTPMGMM 0301: TAGQIIDERS YASGLVPQGI VEEKKVLPLE NPKEMMARWK ANNLDLKTVV KDALLSGRLP LAVLQLHLQH SKDVVEDGEH HDTFTEVRDI GRAIAYDLFL 0401: KGEPGVAIAT LQRLGEDVEA CLNQLVFGTV RRSLRYQIAE EMRKLGFLRP YEDNVLERIS LIERLYPSSH FWETYLARRK ELLKAALPFD SSEISLHLGG 0501: SSLFQHLKIE CGEVDGVVLG SWTKINESAS EHAPDETDAV AGYWAAAAVW SNAWDQRTFD HIVLDQPLVM GVHVPWDSQL EYYMCHNDWD EVLKLLDLIP 0601: EDVLYDGSLQ IALDGPKQSS GVNYSVSSRS EYICSIEEVD AVLMDVPYIK IFRLPGDIRC SLWLTTLMEQ ELARKLIFLK EYWENALDVV YLLARAGVIL 0701: GNCEVSFKEE TCTPSLDLCL SIKKGGANVD TLNAVHKLFI HYCTQYNLPN LLDLYLDHHE LVLDNDSLSS LQEAVGDSHW AKWLLLSRIK GREYDASFSN 0801: ARSIMSRNGA PNSEPSVPEI DEMVCTVDDI ADGAGEMAAL ATMMCAPVPI QKSLSTGSVN RHTNSSAQCT LENLRSFLQR FPTLWSKLVS ACLGEDISGN 0901: LLRTKTKNEY LNWRDGVFFS TARDTSLLQM LPCWFPKAVR RLVQLYIQGP LGWLSFSGYP TGEYLLHRGV EFFINVDDPT EISAISWEAI IQKHIEEELH 1001: HTKTEGTELG LEHFLHRGRP LAAFNAFLEH RVEKLKLEDQ SGSSIHGQRN MQSDVPMLLA PLTQSDESLL SSVIPLAITH FGDSVLVASC AFLLELCGLS 1101: ASMLRIDVAS LRRISSFYKS NGNADMAHQK SLKRSMFHSV SSEDDLMGSL ARALANEYAY PDISSVPKQK QNPSISGSQP GLPLMLVLHH LEQASLPEIG 1201: VGRKTSGYWL LTGDGDGSEL RSQQTSASLH WSLVTLFCQM HKIPLSTKYL AMLARDNDWV GFLSEAQLGG YPFDTVLNVA SKEFGDQRLK AHILTVLRYA 1301: NSKKKATTSF SDDPSRGLSC SPSEGGAYVS AELFRVLAYS EKLKNPGEYL LSKAKEFSWS ILALIASCFP DVSPLSCLTI WLEITAARET SSIKVNDITT 1401: KIAENIGAAV VSTNSLPTDA RGVQFHYNRR NPKRRRLTAH TSVDLLASAN SLNISAGKTF CSHRTEAAED EKAEDSSVID DSSDEHASLS KMVAVLCEQR 1501: LFLPLLKAFD LFLPSCSLLP FFRALQAFSQ MRLSEASAHL GSFWGRVKEE SMHFQSNTAK DVNFGASWIS RTAVKAADAV LSACPSPYEK RCLLQLLAAT 1601: DFGDGGSAAT YYRRLYWKVN LAEPSLREND LDLGNESLDD GSLLTALEKN RQWEQARNWA KQLETIGATW TSSVHHVTET QAESMVAEWK EFLWDVPEER 1701: IALWGHCQTL FIRYSFPALQ AGLFFLRHAE VVEKDLPARE IYELLLLSLQ WLSGLTTLSH PVYPLHLLRE IETRVWLLAV EAESHVKNVG AFSPSSIGKD 1801: MVNGYSSNLI DRTASIITKM DSHISSATKN RIGEKHDARA AGQGNQRNQD TSTSIFGAST KPKRRAKGNV PQIRHFVDSS DRNTDFEDSS SLINIKSEFQ 1901: LQEESTGLEI SLSKWEESIE PAELERAVLS LLEFGQVTAA KQLQLKLAPG NLPSELIILD AVMKLAMLST PCRQVLLSML DDEVRSVIQS HSLKIDQPMI 2001: EPLQILENLS TILNEGSGRG LARKIIAVIK AANILGLTFT EAYQKQPIEL LRLLSLKAQD SFEEACLLVQ THSMPAASIA QILAESFLKG LLAAHRGGYI 2101: DSQKEEGPAP LLWRFSDFLK WAELCPSEQE IGHALMRLVI TGQEIPHACE VELLILSHHF YKSSTCLDGV DVLVALAATR VEAYVAEGDF SCLARLITGV 2201: GNFHALNFIL NILIENGQLD LLLQKFSAAA DANTGTAQAV RSFRMAVLTS LNLYNPNDHD AFAMVYKHFD MKHETATLLE ARADQAAQQW FLRYDKDQNE 2301: DLLDSMRYYI EAAEVHTSID AGNKARKACG QASLVSLQIR MPDSKWLCLS ETNARRALVD QSRFQEALIV AEAYGLNQPS EWALVLWNLM LKPELAEDFV 2401: AEFVAVLPLQ ASMLLELARF YRAEMAARGD QSQFSVWLTG GGLPAEWAKY MWRSFRCLLK RTRDLRLRLQ LATTATGFAD MVDVCMNALD KVPENAGPLV 2501: LKKGHGGGYL PLM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)