AT4G29790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19390.1); Has 538 Blast hits to 357 proteins in 124 species: Archae - 0; Bacteria - 74; Metazoa - 109; Fungi - 58; Plants - 105; Viruses - 2; Other Eukaryotes - 190 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:14584228..14590123 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 133247.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.02 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.78 | ||||||||||||||||||||||||||||
| Length | 1211 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSAPGKFDYS SGGPERPLYR SNLAAQMERS SSFRETMEHP VSSSHPSMLR STSPIAQTDV TNFFQCLRFD PKVVAADHKS IRQGDFKRHV NIALGIQGDE 0101: SPSTPLKGKL IPSPIPEEIK RLKAGLRENN VKARERLKIF NEASSVFNKF FPSVPTKKRS RPEGFSNDRS GDRLALGPGM GKMGIQGQTL PGCFELDQQK 0201: LDERPKSGAL NKRTRTSMMD VRSNAIVRQS AGVDRDKDTM RLANHNAVQG EDRSSIGIDG WEKSKMKKKR SGIKTDGPSS LASNKAVDGY RDLKQGIPKL 0301: AVDSRSRLNG DSNMLRHGAV NGAVPYGRSD SLSQQTGLAA RSLLSRDSDH NPLYNEKRER ATGSDKERVN LRAVNKSNIH DESNSSSPTS NLKISASVRG 0401: PRSGSGLPPK LSPVVHNTPS PSDWDIAGCT NKPPLLSGVP NRKRMTSNRS SSPPVTQWAS QRPQKISRVA RRTNLVPIVS SNDDIPSSDN MSDVGCSETS 0501: FGFYRRSPAA SPQMKMKGEN SLSTTALSGS EEFSPPEIKS KDKGKQSDEV NGKTSQNVPK VSIPGLQSRK NKLASGEELG DGVRRQGRTG RGFASTRSVN 0601: PMGVMKHGTA KQLRSARNGS DKNESRAGRP PTRKLSDRKA YKRQKNTATN ATTLDFLDDG HEELLAAVNS AINFAQNFPS SFWKQMERYF CFISDAHINF 0701: MKQQGELSFM GTTPGGTSSD FDSHEIFPEE LASSKVDSKA APLYQRLLSA LISEDSASVN EDLQFDGFGA DVESEFSVLN HMMEFNGYRS DRLEFDELED 0801: DVSVIPLKGV NSSAHHVNGR LSDHLSIDFS DIQYETLGID EKIYMEAQSI GICLDPMPSI SNVEDEGIVD DIKTLEEAIC EVVSKKKDML NRLLKPALEM 0901: KERQEKEFER LGYEKLIEMA YEKSKASRRH HSASGKSSAT KISKQAAFAF VKRTLERCRQ FEETGKSCFS ESTFKNIIIA GLTQFEDNPT DKEDILSAST 1001: LMGSQPSSSL ALPMTQSTEN HANSSENALR EGRDEMMWSN RMKKRELLLD DVGGKPLSSS TKGKRSERDR DGKGQASSSR GGSTNKIGRP ALVNAKGERK 1101: SKTKPRQKTT PMFSSSSTCV NIVEQTRTSL SKTTNSNNSE YSNLETLDES EPLDLSHLQI PDGLGGPDDF DTQAGDLSSW LNIDDDALPD TDDLLGLQIP 1201: MDDLSDLNMM V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)