AT4G27330.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : sporocyteless (SPL) | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a putative transcription factor that is required for the initiation of both micro- and megagametogenesis and is expressed in the sporogenous tissue of the anther and the ovule. SPL is a chalaza identity gene that share overlapping functions in establishing the prospective chalaza of the ovule. It also plays a central role in patterning both the proximal-distal and the adaxial-abaxial axes in the ovule and generally interacts with YABBY proteins in vitro. Mutant is defective in the differentiation of primary sporogenous cells into microsporocytes, and does not properly form the anther wall. Regulator of anther cell differenctiation | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SPOROCYTELESS (SPL); CONTAINS InterPro DOMAIN/s: Plant transcription factor NOZZLE (InterPro:IPR014855); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:13682327..13683459 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34080.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.47 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 314 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATSLFFMST DQNSVGNPND LLRNTRLVVN SSGEIRTETL KSRGRKPGSK TGQQKQKKPT LRGMGVAKLE RQRIEEEKKQ LAAATVGDTS SVASISNNAT 101: RLPVPVDPGV VLQGFPSSLG SNRIYCGGVG SGQVMIDPVI SPWGFVETSS TTHELSSISN PQMFNASSNN RCDTCFKKKR LDGDQNNVVR SNGGGFSKYT 201: MIPPPMNGYD QYLLQSDHHQ RSQGFLYDHR IARAASVSAS STTINPYFNE ATNHTGPMEE FGSYMEGNPR NGSGGVKEYE FFPGKYGERV SVVAKTSSLV 301: GDCSPNTIDL SLKL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)