AT4G22285.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin C-terminal hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ubiquitin C-terminal hydrolases superfamily protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: Ubiquitin C-terminal hydrolases superfamily protein (TAIR:AT4G22350.2); Has 3604 Blast hits to 3114 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 2060; Fungi - 575; Plants - 445; Viruses - 0; Other Eukaryotes - 524 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:11779063..11781898 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62938.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.62 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 541 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKGEREVKNG VSEEEREVKR KRVMERSDSP PPPLGFNNPL LPLANTYDDD DEEEENEQKK SQARGNGVAK GEGNGNKVKG EAQEEVDDDE DDDVSKGKGK 101: HSRHVEVRRD CPYLDTVNRQ VLDFDFERFC SVSLSNLNVY ACLVCGKYFQ GRSQKSHAYT HSLEAGHHVY INLLTEKVYC LPDSYEINDP SLDDIRHVLN 201: PRFSRAQVNE LDKNRQWSRA LDGSDYLPGM VGLNNIQKTE FVNVTIQSLM RVTPLRNFFL IPENYQHCKS PLVHRFGELT RKIWHARNFK GQVSPHEFLQ 301: AVMKASKKRF RIGQQSDPVE FMSWLLNTLH MDLRTSKDAS SIIHKCFQGE LEVVKEFQGN ENKEISRMSF LMLGLDLPPP PLFKDVMEKN IIPQVALFDL 401: LKKFDGETVT EVVRPKLARM RYRVIKSPRY LMFHMVRFKK NNFFKEKNPT LVNFPVKDME LRDYIPSLPR APEGENVCSK YNLIANIVHD GKPEDGYFRV 501: FVQRKSQELW YEMQDLHVAE TLPQMVELSE AYMQIYEQEE E |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)