AT4G15233.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.548 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ABC-2 and Plant PDR ABC-type transporter family protein | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ABC-2 and Plant PDR ABC-type transporter family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: ABC-2 and Plant PDR ABC-type transporter family protein (TAIR:AT4G15236.1); Has 374708 Blast hits to 270086 proteins in 3960 species: Archae - 7613; Bacteria - 297947; Metazoa - 9730; Fungi - 8140; Plants - 7347; Viruses - 9; Other Eukaryotes - 43922 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:8688322..8694432 | ||||||||||||
| Molecular Weight (calculated) | 149204.00 Da | ||||||||||||
| IEP (calculated) | 8.37 | ||||||||||||
| GRAVY (calculated) | 0.07 | ||||||||||||
| Length | 1311 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MTMSQTDGVE FASRNTNENG HDDDDQLRSQ WVAIERSPTF ERITTALFCK RDEKGKKSQR RVMDVSKLDD LDRRLFIDDL IRHVENDNHV LLQKIRKRID 0101: EVGIDLPKIE ARFSDLFVEA ECEVVYGKPI PTLWNAISSK LSRFMCSNQA KKISILKGVS GIIRPKRMTL LLGPPSCGKT TLLLALSGRL DPSLKTRGDI 0201: SYNGHLFSEF VPEKTSSYVS QNDLHIPELS VRETLDFSGC FQGTGSRLEM TKEISRREKL KGIVPDPDID AYMKILGLTI CADTRVGDAS RPGISGGQKR 0301: RLTTGEMIVG PIKTLFMDEI SNGLDSSTTF QILSCLQQFA RLSEGTILVS LLQPAPETFE LFDDLILMGE GKIIYHGPRD FVCSFFEDCG FKCPNRKSVA 0401: EFLQEVISRK DQEQYWCHIE KTYCYVSIES FIEKFKKSDL GLELQDRLSK TYDKSQTQKD GLCFRKYSLS NWDMLKACSR REFLLMKRNS FVYVFKSGLL 0501: IFIGFIAMTV YLRTGSTRDS LHANYLMGSL FFSLFKLLAD GLPELTLTIS RIAVFCKQKE LYFYPAWAYA IPSAILKIPI SFLESFLWTM LTYYVIGYSP 0601: EMGRFIRQFL ILFALHLSCI SMFRAIAAVF RDFVVATTVG SISIVLLSVF GGFIVRKPSM PSWLEWGFWL SPLSYAEIGL TANEFFAPRW GKITSENRTL 0701: GEQVLDARGL NFGNQSYWNA FGALIGFTLF FNTVFALALT FLKSAFKPGV LTALMGVSGA GKTTLLDVLS GRKTFGDIKG QIEVGGYVKV QDTFSRVSGY 0801: CEQFDIHSPN LTVQESLKYS AWLRLTSNIS SETKCAIVNE VLETIELEEI KDSIVGIPGI SGLTTEQRKR LTIAVELVSN PSIIFMDEPT TGLDARAAAI 0901: VMRAVKNIAE TGRTVVCTIH QPSIDIFEAF DELILMKNGG KIIYYGPLGQ HSSKVIEYFM RIHGVPKLKE NSNPATWILD ITSKSSEDKL GVDLAQMYEE 1001: STLFKENKMV IEQTRCTSLG SERLILSSRY AQTSWEQFKA CLWKQHLSYW RNPSYNLTRI IFMSFTCMLC GILFWQKAKE INNQQDLFNV FGSMFTVVLF 1101: SGINNCSTVL FSVATERNVF YRERFSRMYN SWAYSLAQVL VEIPYSLFQS IVYVIIVYPM VGYHWSVFKV FWSFYSIFCT LLIFNYFGML LVVVTPNVHI 1201: AFTLRSSFYA IVNLFAGYVM PKPNIPRWWI WMYYLSPTSW VLNGLLTSQY GDMEKEILAF GEKKKVSDFL EDYFGYRYDS LALVAVVLIA FPILLASLFA 1301: FFIGKLNFQK K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)