AT4G13350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NSP (nuclear shuttle protein)-interacting GTPase | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a GTPase that interacts with nuclear shuttle proteins (NSPs) from a number of different plant viruses. The gene is widely expressed and NIG transcript levels do not rise in response to viral infection. This cytoplasmic protein does not directly interact with a viral movement protein (MP), but, it does promote the movement of NSP from the nucleus to the cytoplasm. Overexpression of NIG in Arabidopsis plants renders them more sensitive to geminivirus infection. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
NSP (nuclear shuttle protein)-interacting GTPase (NIG); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: nucleocytoplasmic transport, response to virus; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: flower, root, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ArfGap/RecO-like zinc finger domain-containing protein (TAIR:AT4G32630.1); Has 7463 Blast hits to 6530 proteins in 396 species: Archae - 2; Bacteria - 285; Metazoa - 3343; Fungi - 1586; Plants - 848; Viruses - 60; Other Eukaryotes - 1339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:7770170..7773321 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65030.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.37 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.75 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 602 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGRVKEDEK NEKIIRSLLK LPENKRCINC NSLGPQYVCT TFWTFVCTNC SGIHREFTHR VKSISMAKFT SQEVTALKEG GNQHAKDIYF KGLDQQRQSV 101: PDGSNVERLR DFIRHVYVNK RYTNEKNDDK SPSETRSSSG SRSPPYEDGY DRRYGDRSSP GGRSPGFETG SRNAVNNRKS PARPEILNDW RREDRFGGRK 201: TSEEGSQSPE QVKDLGSASP PVARPVREIL GDSVIPLRVG EPPKPPVSRN TDASAHAKSG TSLSSLMSTN EKPPEVKLET ALSLIDFDTD FETPAPSVAI 301: QAPLSTTSQP APQPTTSSND NWASFDAAPS APSLNVSQPP PSGNTLDSLL SQLAVTSSVP GQASTPSNGP VNLGHSTSQI FAPFQNEHSS EQPWNTALAS 401: NVQRSMSAPS LQPLQGVPSG GLQSSEVKPS GRSELPADLF AVNYPSYHAP VPGWQAGPPH AMHYGMQQYN NPVPYQNVPQ PGKSMNPFDF SPGPPSQTQT 501: ENMFPSMAPL QGALPPSGMM PSQGVHNQFN IPSQGSAHPS AMPPRYMPSQ IPGSMPPSNV NPIGDINTSY DTQQTYQNFG SSFAAAVPLN PPSFQSGGNP 601: FG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)