AT4G13280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : terpenoid synthase 12 | ||||||||||||
| Curator Summary (TAIR10) |
Catalyzes the conversion of farnesyl diphosphate to (Z)-gamma-bisabolene and the additional minor products E-nerolidol and alpha-bisabolol. Expressed in cortex and sub-epidermal layers of roots, leaf hydathodes and flower stigmata. Induced by wounding. | ||||||||||||
| Computational Description (TAIR10) |
terpenoid synthase 12 (TPS12); FUNCTIONS IN: cyclase activity; INVOLVED IN: response to wounding, sesquiterpenoid biosynthetic process, farnesyl diphosphate metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: root cortex, stigma, hydathode; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpenoid synthase 13 (TAIR:AT4G13300.1); Has 1634 Blast hits to 1617 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1630; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:7733161..7736745 | ||||||||||||
| Molecular Weight (calculated) | 60650.20 Da | ||||||||||||
| IEP (calculated) | 5.55 | ||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||
| Length | 524 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESQTTFKYE SLAFTKLSHC QWTDYFLSVP IDESELDVIT REIDILKPEV MELLSSQGDD ETSKRKVLLI QLLLSLGLAF HFENEIKNIL EHAFRKIDDI 101: TGDEKDLSTI SIMFRVFRTY GHNLPSSVFK RFTGDDGKFQ QSLTEDAKGI LSLYEAAHLG TTTDYILDEA LKFTSSHLKS LLAGGTCRPH ILRLIRNTLY 201: LPQRWNMEAV IAREYISFYE QEEDHDKMLL RLAKLNFKLL QLHYIKELKS FIKWWMELGL TSKWPSQFRE RIVEAWLAGL MMYFEPQFSG GRVIAAKFNY 301: LLTILDDACD HYFSIHELTR LVACVERWSP DGIDTLEDIS RSVFKLMLDV FDDIGKGVRS EGSSYHLKEM LEELNTLVRA NLDLVKWARG IQTAGKEAYE 401: WVRSRPRLIK SLAAKGRLMD DITDFDSDMS NGFAANAINY YMKQFVVTKE EAILECQRMI VDINKTINEE LLKTTSVPGR VLKQALNFGR LLELLYTKSD 501: DIYNCSEGKL KEYIVTLLID PIRL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)