AT4G10600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/FYVE/PHD zinc finger superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G32810.2); Has 438 Blast hits to 436 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 196; Fungi - 80; Plants - 151; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:6547934..6548647 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 26793.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.59 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||
| Length | 237 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKPHEDWVYE SWTVDCVCGV NFDDGKEMVD CDECGVWVHT WCSRYVKGDD LFVCHKCKIK NNEDELSKLS VTKSLRMENL CTQSSESVVL KACSEIPIEE 101: RVHVQGVPGG DLGLFECVSS VFSRQLWKCS GYVPKKFRFQ CREFPCWDEK ENVCDVVGDE DDSNLAGVLL SMSKENGVDG KGDNARNCGS REIESDVEKE 201: KSLLCDPLSI YKRRNESVGG FEDGVKKKVK VADKEEE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)